Biology:Methanosphaera
From HandWiki
Methanosphaera is a genus of Archaea within the family Methanobacteriaceae.[1] It was distinguished from other genera within Methanobacteriaceae in 1985 on the basis of the oligonucleotide sequence of its 16S RNA.[2] Like other archaea within Methanobacteriaceae, those of Methanosphaera are methanogens, but while most use formate to reduce carbon dioxide, those of Methanosphaera use hydrogen to reduce methanol to methane.[3]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[4] and National Center for Biotechnology Information (NCBI).[1]
| 16S rRNA based LTP_07_2026[5][6][7] | 53 marker proteins based GTDB 11-RS232[8][9][10] | ||||||||||||||||||||||||
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See also
References
- ↑ 1.0 1.1 C.L. Schoch. "Methanosphaera". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?command=show&mode=tree&id=2316&lvl=3.
- ↑ Bergey's Manual of Systematic Bacteriology Volume I: The Archaea and the Deeply Branching Phototrophic Bacteria (2 ed.). Springer. 2001. p. 227. ISBN 978-1-4419-3159-7. https://books.google.com/books?id=3znhBwAAQBAJ&q=within+the+genus+Methanosphaera&pg=PA227. Retrieved 2016-07-24.
- ↑ Adam S. Bonin; David R. Boone (1979). "The Order Methanobacteriales". The Prokaryotes. 3. Springer. pp. 231–243. doi:10.1007/0-387-30743-5_11. ISBN 978-0-387-30743-5.
- ↑ Methanosphaera in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research 53: D1–D12. doi:10.1093/nar/gkaf1110.
- ↑ "The LTPlus". https://bioinfo.uib.es/ltp/#LTPlus.
- ↑ "LTP_all tree in newick format". https://biocom.uib.es/opucheck-backend/api/releases/07_26_04.
- ↑ Rossello-Mora, Ramon; Viver, Tomeu; Palmer-Rodríguez, Pere; Westram, Ralf; Bustos-Caparros, Esteban; Gago, Joan Francisco; Gonzalez-Mendez, Jaime; Llabrés, Mercè et al. (22 April 2026). "A pipeline for improved 16S rRNA gene-based phylogeny and diversity analyses of Bacteria and Archaea" (in en). Nature Portfolio. doi:10.21203/rs.3.rs-9370187/v1. https://doi.org/10.21203/rs.3.rs-9370187/v1.
- ↑ "GTDB release 11-RS232". https://gtdb.ecogenomic.org/about#4%7C.
- ↑ "ar53_r232.sp_label". https://data.gtdb.ecogenomic.org/releases/release232/232.0/auxillary_files/ar53_r232.sp_labels.tree.
- ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/.
Further reading
- F. Fricke, Wolfgang; Seedorf, Henning; Henne, Anke; Kruer, Markus; Liesegang, Heiko; Hedderich, Reiner; Gottschalk, Gerhard; K. Thauer, Rudolf (January 2006). "The Genome Sequence of Methanosphaera stadtmanae Reveals Why This Human Intestinal Archaeon Is Restricted to Methanol and H2 for Methane Formation and ATP Synthesis". Journal of Bacteriology 188 (2): 642–658. doi:10.1128/jb.188.2.642-658.2006. PMID 16385054.
- Miller TL; Wolin MJ (1985). "Methanosphaera stadtmaniae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen". Arch. Microbiol. 141 (2): 116–122. doi:10.1007/BF00423270. PMID 3994486. Bibcode: 1985ArMic.141..116M.
- Lecours, Pascale Blais; Marsolais, David; Cormier, Yvon; Berberi, Marie; Hache, Chantal; Bourdages, Raymond; Duchaine, Caroline (February 3, 2014). "Increased Prevalence of Methanosphaera stadtmanae in Inflammatory Bowel Diseases". PLOS ONE 9 (2). doi:10.1371/journal.pone.0087734. PMID 24498365. Bibcode: 2014PLoSO...987734B.
- Bang, Corrina; Weidenbach, Katrin; Gutsmann, Thomas; Heine, Holger; Schmitz, Ruth (June 10, 2014). "The Intestinal Archaea Methanosphaera stadtmanae and Methanobrevibacter smithii Activate Human Dendritic Cells". PLOS ONE 9 (6). doi:10.1371/journal.pone.0099411. PMID 24915454. Bibcode: 2014PLoSO...999411B.
Wikidata ☰ Q6823603 entry
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