Short description
This article lists the genera of the Archaea . The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] National Center for Biotechnology Information (NCBI).[2]
Phylogeny National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups.[3] [4] [5] [6] [7]
Cladogram was taken from the GTDB release 08-RS214 (28th April 2023).[8] [9] [10] [11] [12] [13]
Archaea
"Huberarchaeaota"
"Aenigmarchaeota"
"Nanohalarchaeota"
"Nanoarchaeota"
"Altarchaeota"
"Iainarchaeota"
"Micrarchaeota"
"Hadarchaeota"
Methanobacteriota_B
"Methanomada"
"Hydrothermarchaeota"
"Methanobacteriota"
Phylum "Microcaldota" Class "Microcaldia" Order "Microcaldales" Family "Microcaldaceae" Sakai et al. 2022
?"Microcaldus " Sakai et al. 2022 Phylum "Undinarchaeota" Class "Undinarchaeia" Order "Undinarchaeales" Family "Naiadarchaeaceae" Dombrowski et al. 2020
"Candidatus Naiadarchaeum" Dombrowski et al. 2020
Family "Undinarchaeaceae" Dombrowski et al. 2020
"Candidatus Undinarchaeum" Dombrowski et al. 2020 Phylum "Altarchaeota" Class "Altarchaeia" Order "Altarchaeales" Family "Altarchaeaceae" corrig. Probst et al. 2014
"Candidatus Altarchaeum" corrig. Probst et al. 2014 Phylum "Iainarchaeota" Class "Iainarchaeia" Order "Forterreales" Family "Forterreaceae" Pallen, Rodriguez-R & Alikhan 2022
"Candidatus Forterrea" Probst & Banfield 2017 Order "Iainarchaeales" Family "Iainarchaeaceae" Rinke et al. 2020
"Candidatus Iainarchaeum" Rinke et al. 2013 Phylum "Micrarchaeota"
Phylogeny of Micrarchaeota[8] [9] [10]
"Norongarragalinales"
"Ca. Norongarragalina"
"Micrarchaeales"
"Micrarchaeaceae"
"Ca. Mancarchaeum"
"Ca. Micrarchaeum"
"Anstonellales"
"Anstonellaceae"
"Ca. Anstonella"
"Bilamarchaeaceae"
"Ca. Bilamarchaeum"
"Fermentimicrarchaeales"
"Ca. Fermentimicrarchaeum"
"Burarchaeales"
"Ca. Burarchaeum"
"Gugararchaeales"
"Ca. Gugararchaeum"
Class "Micrarchaeia" Order "Norongarragalinales" Family "Norongarragalinaceae" Vázquez-Campos et al. 2021
"Candidatus Norongarragalina" Vázquez-Campos et al. 2021 Order "Micrarchaeales" Family "Micrarchaeaceae" Vázquez-Campos et al. 2021
"Candidatus Mancarchaeum" Golyshina et al. 2017
"Candidatus Micrarchaeum" Baker et al. 2010 Order "Anstonellales" Family "Anstonellaceae" Vázquez-Campos et al. 2021
"Candidatus Anstonella" Vázquez-Campos et al. 2021
Family "Bilamarchaeaceae" Vázquez-Campos et al. 2021
"Candidatus Bilamarchaeum" Vázquez-Campos et al. 2021 Order "Fermentimicrarchaeales" Family "Fermentimicrarchaeaceae" Kadnikov et al. 2020 (Sv326)
"Candidatus Fermentimicrarchaeum" Kadnikov et al. 2020 Order "Burarchaeales" Family "Burarchaeaceae" Vázquez-Campos et al. 2021
"Candidatus Burarchaeum" Vázquez-Campos et al. 2021 Order "Gugararchaeales" Family "Gugararchaeaceae" Vázquez-Campos et al. 2021
"Candidatus Gugararchaeum" Vázquez-Campos et al. 2021 Phylum "Huberarchaeaota" Class "Huberarchaeia" Order "Huberarchaeales" Family "Huberarchaeaceae" Rinke et al. 2020
"Candidatus Huberarchaeum" corrig. Schwank et al. 2019 Phylum "Aenigmatarchaeota" Class "Aenigmatarchaeia" Order "Aenigmatarchaeales" Family "Aenigmatarchaeaceae" corrig. Rinke et al. 2020
"Candidatus Aenigmatarchaeum" corrig. Rinke et al. 2013 Phylum "Nanohalarchaeota"
Phylogeny of Nanohalobiaceae[8] [9] [10]
"Candidatus Nanosalinicola"
"Candidatus Nanosalina"
"Candidatus Nanohalobium"
Class "Nanohalarchaeia" Order "Nanohalarchaeales" Family "Nanohalarchaeaceae"
?"Candidatus Nanohalarchaeum" corrig. Hamm et al. 2019
?"Candidatus Nanopetraeus" corrig. Crits‐Christoph et al. 2016 Class "Nanohalobiia" Order "Nanohalobiales" Family "Nanoanaerosalinaceae" Zhao et al. 2022
?"Candidatus Nanoanaerosalina" Zhao et al. 2022
Family "Nanohalalkaliarchaeaceae" La Cono et al. 2020
?"Candidatus Nanohalalkaliarchaeum" Ghai et al. 2011
Family "Nanohalobiaceae" La Cono et al. 2020
?"Candidatus Haloredivivus" Ghai et al. 2011
"Candidatus Nanohalobium" La Cono et al. 2020
"Candidatus Nanosalina" Narasingarao et al. 2012
"Candidatus Nanosalinicola" corrig. Narasingarao et al. 2012 Phylum "Nanoarchaeota"
Phylogeny of "Nanoarchaeota"[8] [9] [10]
"Nanoarchaeia"
"Nanoarchaeales"
"Nanoarchaeaceae"
"Nanoarchaeum
"Nanopusillaceae"
"Ca. Nanoclepta"
"Ca. Nanopusillus"
"Pacearchaeales"
"Woesearchaeales"
"Tiddalikarchaeales"
"Ca. Tiddalikarchaeum"
"Parvarchaeales"
"Ca. Parvarchaeum"
Class "Nanoarchaeia" Nanoarchaeia incertae sedis "Mamarchaeales"
"Pacearchaeales" (DHVE-5, DUSEL-1)
"Wiannamattarchaeales" Vazquez-Campos et al. 2019 (LFWA-II, Eury4AB)
"Woesearchaeales" (DHVE-6)
"Jingweiarchaeales" Rao et al. 2023
Family "Haiyanarchaeaceae" Rao et al. 2023
?"Candidatus Haiyanarchaeum" Rao et al. 2023
Family "Jingweiarchaeaceae" Rao et al. 2023
?"Candidatus Jingweiarchaeum" Rao et al. 2023 Order "Nanoarchaeales" Family "Nanoarchaeaceae" Huber et al. 2011
Family "Nanopusillaceae" Huber et al. 2011
Nanobdella Kato et al. 2022 "Candidatus Nanoclepta" St. John et al. 2019
"Candidatus Nanopusillus" Wurch et al. 2016 ["Candidatus Nanobsidianus" Castelle et al. 2015 ] Order "Tiddalikarchaeales" Family "Tiddalikarchaeaceae" Vázquez-Campos et al. 2021
"Candidatus Tiddalikarchaeum" Vázquez-Campos et al. 2021 Order "Parvarchaeales" Family "Parvarchaeaceae" Rinke et al. 2020
"Candidatus Acidifodinimicrobium" Luo et al. 2020
"Candidatus Parvarchaeum" Baker et al. 2010 (ARMAN 4 & 5)
?"Candidatus Rehaiarchaeum" Rao et al. 2023 Phylum "Asgardaeota"
Phylogeny of Asgardaeota[8] [9] [10]
"Sifarchaeia"
"Borrarchaeales"
"Sifarchaeales"
"Wukongarchaeia"
"Wukongarchaeales"
"Heimdallarchaeia"
"Hodarchaeales"
"Gerdarchaeales"
"Kariarchaeales"
"Heimdallarchaeales"
"Jordarchaeia"
"Jordarchaeales"
"Baldrarchaeia"
"Baldrarchaeales"
"Thorarchaeia"
"Thorarchaeales"
"Odinarchaeia"
"Odinarchaeales"
"Hermodarchaeia"
"Hermodarchaeales"
"Lokiarchaeia"
"Helarchaeales"
"Lokiarchaeales"
Asgardaeota incertae sedis Class "Asgardarchaeia "
Order "Asgardarchaeales "
Family "Asgardarchaeaceae" Eme et al. 2023
?"Candidatus Asgardarchaeum" Eme et al. 2023 Class "Balderarchaeia "
Order "Balderarchaeales "
Family "Balderarchaeaceae" Xie et al. 2022
?"Candidatus Balderarchaeum" Xie et al. 2022 Class "Freyrarchaeia "
Order "Freyrarchaeales "
Family "Freyrarchaeaceae" Xie et al. 2022
?"Candidatus Freyrarchaeum" Xie et al. 2022 [14] [15] Class "Friggarchaeia"Class "Gefionarchaeia"Class "Idunnarchaeia"Class "Njordarchaeia "
Order "Njordarchaeales "
Family "Njordarchaeaceae" Xie et al. 2022
?"Candidatus Njordarchaeum" Xie et al. 2022 [14] [16] Class "Tyrarchaeia "
Order "Tyrarchaeales "
Family "Tyrarchaeaceae" Xie et al. 2022
?"Candidatus Tyrarchaeum" Xie et al. 2022 Class "Sifarchaeia" Order "Borrarchaeales" Family "Borrarchaeaceae" Liu et al. 2021
"Candidatus Borrarchaeum" Liu et al. 2021 Order "Sifarchaeales" Family "Sifarchaeaceae" Sun et al. 2021
"Candidatus Sifarchaeum" corrig. Farag, Zhao & Biddle 2020 Class "Wukongarchaeia" Order "Wukongarchaeales" Family "Wukongarchaeaceae" Liu et al. 2021
"Candidatus Wukongarchaeum" Liu et al. 2021 Class "Heimdallarchaeia" Order "Hodarchaeales" Family "Hodarchaeaceae" Liu et al. 2021
"Candidatus Hodarchaeum" Liu et al. 2021 Order "Gerdarchaeales" Order "Kariarchaeales" Family "Kariarchaeaceae" Liu et al. 2021
"Candidatus Kariarchaeum" Liu et al. 2021 Order "Heimdallarchaeales" Family "Heimdallarchaeaceae" Wu et al. 2022
?"Candidatus Heimdallarchaeum" Wu et al. 2022 [17] Class "Jordarchaeia" Order "Jordarchaeales" Family "Jordarchaeaceae" Sun et al. 2021
"Candidatus Jordarchaeum" Sun et al. 2021 Class "Baldrarchaeia" Order "Baldrarchaeales" Family "Baldrarchaeaceae" corrig. Liu et al. 2021
"Candidatus Baldrarchaeum" corrig. Liu et al. 2021 Class "Thorarchaeia" Order "Thorarchaeales" Family "Thorarchaeaceae" (MBG-B) Class "Odinarchaeia" Order "Odinarchaeales" Family "Odinarchaeaceae" Tamarit et al. 2022
"Candidatus Odinarchaeum" Tamarit et al. 2022 Class "Hermodarchaeia" Order "Hermodarchaeales" Family "Hermodarchaeaceae" corrig. Liu et al. 2021
"Candidatus Hermodarchaeum" corrig. Liu et al. 2021 Class "Lokiarchaeia" Order "Helarchaeales" Order "Sigynarchaeales" Family "Sigynarchaeaceae" Xie et al. 2022 [14] [18] ?"Candidatus Sigynarchaeum" Xie et al. 2022 Order "Lokiarchaeales" In GTDB as order CR-4
Family "Lokiarchaeaceae" Vanwonterghem et al. 2016
?"Candidatus Lokiarchaeum " corrig. Spang et al. 2015 (MBGB, DSAG)
Family "Prometheoarchaeaceae" Pallen, Rodriguez-R & Alikhan 2022 [17] ?"Candidatus Harpocratesius" Wu et al . 2022 [17]
"Candidatus Promethearchaeum" corrig. Imachi, Nobu & Takai 2020
Phylogeny of Thermoproteota[8] [9] [10]
"Korarchaeia"
"Korarchaeales"
"BAT"
"Bathyarchaeia"
Nitrososphaeria A
"Caldarchaeales"
Nitrososphaeria
"Geothermarchaeales"
Conexivisphaerales
Nitrososphaerales
"Sulfobacteria"
"Methanomethylicia"
"Nezhaarchaeales"
"Methanomethylicales"
"Thermoproteia "
Thermoproteota Incertae sedis "Candidatus Pyrohabitans" Adam et al. 2022
"Brockarchaeia" Class "Korarchaeia" Order "Korarchaeales" Family "Korarchaeaceae" Rinke et al. 2020
"Candidatus Korarchaeum" Elkins et al. 2008
"Candidatus Methanodesulfokora" McKay et al. 2019 Class "Bathyarchaeia" Order "Bathyarchaeales" Family "Bathyarchaeaceae" Khomyakova et al. 2023
?"Candidatus Bathyarchaeum" Khomyakova et al. 2023 Order "Hecatellales" Family "Hecatellaceae" Rinke et al. 2020
?"Candidatus Hecatella" Adam et al. 2022 MCG6 ?"Candidatus Termiticorpusculum" Loh, Herve & Brune 2021
?"Candidatus Termitimicrobium" Loh, Herve & Brune 2021 Class Nitrososphaeria A Order "Caldarchaeales"
Phylogeny of Nitrososphaeria_A[8] [9] [10]
"Caldarchaeales"
"Caldarchaeaceae"
"Ca. Calditenuis"
"Wolframiiraptoraceae"
"Ca. Terraquivivens"
"Ca. Geocrenenecus"
"Ca. Benthortus"
"Ca. Wolframiiraptor"
Family "Caldarchaeaceae" Rinke et al. 2020
?"Candidatus Caldarchaeum" corrig. Nunoura et al. 2011 (HWCGI)
"Candidatus Calditenuis" corrig. Beam et al. 2016
?"Candidatus Pelearchaeum" Balbay et al. 2023 Family "Wolframiiraptoraceae" Buessecker et al. 2022
"Candidatus Benthortus" Buessecker et al. 2022
"Candidatus Geocrenenecus" Buessecker et al. 2022
"Candidatus Terraquivivens" Buessecker et al. 2022
"Candidatus Wolframiiraptor" Buessecker et al. 2022 Nitrososphaeria Incertae sedis "Cenoporarchaeum " corrig. Zhang et al. 2019
"Candidatus Gigantothauma" corrig. Muller et al. 2010
"Candidatus Nitrosodeserticola" Hwang et al. 2021 Order "Geothermarchaeales" Family "Geothermarchaeaceae" Adam et al. 2022
?"Candidatus Geothermarchaeum" Adam et al. 2022
?"Candidatus Scotarchaeum" Adam et al. 2022 Order "Conexivisphaerales" Family "Conexivisphaeraceae" Kato et al. 2021 (THSC Group)
Conexivisphaera Kato et al. 2021 Order Nitrososphaerales
Phylogeny of Nitrososphaerales[8] [9] [10]
"Nitrosocaldaceae"
"Ca. Nitrosothermus"
"Ca. Nitrosocaldus"
Family "Methylarchaceae" Hua et al. 2019
?"Candidatus Methylarchaeum" Hua et al. 2019
?"Candidatus Methanotowutia" Ou et al. 2022
Family "Nitrosocaldaceae" Qin et al. 2016
"Candidatus Nitrosocaldus" de la Torre et al. 2008
"Candidatus Nitrosothermus" Luo et al. 2021
Family Nitrososphaeraceae Stieglmeier et al. 2014
"Candidatus Nitrosocosmicus" corrig. Lehtovirta-Morley et al. 2016
"Candidatus Nitrosopolaris" Pessi, Rutanen & Hultman 2022
Nitrososphaera Stieglmeier et al. 2014
Family Nitrosopumilaceae Qin et al. 2017
"Cenarchaeum DeLong & Preston 1996
Nitrosarchaeum corrig. Jung et al. 2018 "Candidatus Nitrosopelagicus" Santoro et al. 2015
Nitrosopumilus Qin et al. 2017 ["Candidatus Nitrosomarinus" Ahlgren et al. 2017 ]?"Candidatus Nitrosospongia" Moeller et al. 2019
"Candidatus Nitrosotalea" Lehtovirta 2011
"Candidatus Nitrosotenuis" Lebedeva et al. 2013 Class "Culexarchaeia" Order "Culexarchaeles" Family "Culexarchaeaceae" Kohtz et al. 2022 ["Methanomediaceae" Berghuis et al. 2019 ]
?"Candidatus Culexarchaeum" Kohtz et al. 2022 ["Candidatus Methanomedium" Berghuis et al. 2019 ]
Family "Culexmicrobiaceae" Kohtz et al. 2022
?"Candidatus Culexmicrobium" Kohtz et al. 2022 Class "Methanomethylicia" Methanomethylicia incertae sedis Order "Methanohydrogenicales "
Family "Methanohydrogenicaceae" Berghuis et al. 2019
?"Candidatus Methanohydrogenicus" Berghuis et al. 2019 Order "Methanomethylarchaeales "
Family "Methanomethylarchaeceae" corrig. Hua et al. 2019
?"Candidatus Methanomethylarchaeum" corrig. Hua et al. 2019 Order "Methanomethylovorales "
Family "Methanomethylovoraceae" Hua et al. 2019
?"Candidatus Methanomethylovorus" Hua et al. 2019 Order "Nezhaarchaeales" Family "Methanohydrogenotrophicaceae" Hua et al. 2019
?"Candidatus Methanogearchaeum" corrig. Hua et al. 2019
?"Candidatus Methanohydrogenotrophicum" Hua et al. 2019 Order "Methanomethylicales" Family "Candidatus Methanomethylicaceae" corrig. Vanwonterghem et al. 2016
"Candidatus Methanomethylicus" Vanwonterghem et al. 2016
"Candidatus Methanosuratinicola" corrig. Vanwonterghem et al. 2016 Order "Gearchaeales" Order Thermofilales
Phylogeny of Thermoproteales[8] [9] [10]
Thermoproteaceae
"Thermocladiaceae"
Family Thermoproteaceae Zillig & Stetter 1982
Family "Thermocladiaceae" Rinke et al. 2020 ex Chuvochina et al. 2023
Class "Sulfolobia" Order "Marsarchaeales" Family Desulfurococcaceae Zillig & Stetter 1983
Family Fervidicoccaceae Perevalova et al. 2010
Family Pyrodictiaceae Burggraf, Huber & Stetter 1997
Family "Ignicoccaceae" Rinke et al. 2020 ex Chuvochina et al. 2023
Family Acidilobaceae Prokofeva et al. 2009
Family "Ignisphaeraceae" Rinke et al. 2020 ex Chuvochina et al. 2023
Family "Zestosphaeraceae" Pallen, Rodriguez-R & Alikhan 2022
Zestosphaera St. John et al. 2021
Family Sulfolobaceae Stetter 1989
Acidianus Segerer et al. 1986 ["Sulfosphaerellus " Zhong et al. 1982 ; Desulfurolobus Zillig & Böck 1987 ]"Candidatus Aramenus" Servín-Garcidueñas & Martínez-Romero 2014
Metallosphaera Huber et al. 1989 Saccharolobus Sakai & Kurosawa 2018 Stygiolobus Segerer et al. 1991 Sulfodiicoccus Sakai & Kurosawa 2017 Sulfolobus Brock et al. 1972 Sulfuracidifex Itoh et al. 2020 Sulfurisphaera Kurosawa et al. 1998 ?Sulfurococcus Golovacheva, Vale’kho & Troitskii 1995 Phylum "Hadarchaeota" Class "Persephonarchaeia" Class "Hadarchaeia" Order "Hadarchaeales" Family "Hadarchaeaceae" Chuvochina et al. 2019 ex Chuvochina et al. 2023
"Candidatus Hadarchaeum" Chuvochina et al. 2019
?"Candidatus Hadesarchaeum" Hua et al. 2019
?"Candidatus Methanourarchaeum" Hua et al. 2019 Phylum Methanobacteriota_B Class "Theionarchaeia" Order "Methanofastidiosales" Family "Methanofastidiosaceae" Rinke et al. 2020
"Candidatus Methanofastidiosum" corrig. Nobu et al. 2016 Phylum "Hydrothermarchaeota" Class "Hydrothermarchaeia" Order "Hydrothermarchaeales" Family "Hydrothermarchaeaceae" Chuvochina et al. 2019 ex Chuvochina et al. 2023
"Candidatus Hydrothermarchaeum" Chuvochina et al. 2019 Phylum "Methanobacteriota" Family "Tepidaquicellaceae" corrig. Kadnikov et al. 2020
?"Candidatus Tepidaquicella" corrig. Kadnikov et al. 2020
Family Methanothermaceae Stetter et al. 1982
Family "Methanothermobacteraceae" Rinke et al. 2020 ex Chuvochina et al. 2023
Family Methanobacteriaceae Barker 1956
Phylum "Thermoplasmatota"
Phylogeny of Thermoplasmatota[8] [9] [10]
"Izemarchaea"
"Thermoprofundales"
"Poseidoniia"
Thermoplasmata
"Natronoplasmatales"
"Proteinoplasmatales" (SG8-5)
"Gimiplasmatales"
"Sysuiplasmatales"
Methanomassiliicoccales
Thermoplasmatota incertae sedis Order "Yaplasmatales" Class "Izemarchaea" Order "Thermoprofundales" Class "Poseidoniia" Order MGIII Order "Poseidoniales" Family "Poseidoniaceae" corrig. Rinke et al. 2019
"Candidatus Poseidonia" Rinke et al. 2019
Family "Thalassarchaeaceae" corrig. Rinke et al. 2019
"Candidatus Thalassarchaeum" corrig. Martin-Cuadrado et al. 2015 Order "Lunaplasmatales" Family "Lunaplasmataceae" Zinke et al. 2021
?"Candidatus Lunaplasma" Zinke et al. 2021 Order "Natronoplasmatales"
Phylogeny of Natronoplasmatales[8] [9] [10]
"Candidatus Haladaptiplasma"
"Candidatus Natronoplasma"
"Candidatus Saliniplasma"
Family "Natronoplasmataceae" Pallen, Rodriguez-R & Alikhan 2022 (PWKY01)
"Candidatus Haladaptiplasma" corrig. Zhou et al. 2022
?"Candidatus Halarchaeoplasma" Zhou et al. 2023 ["Candidatus Haloplasma " Zhou et al. 2022 non Antunes et al. 2008 ]
"Candidatus Natronoplasma" Zhou et al. 2022
"Candidatus Saliniplasma" Zhou et al. 2022 Order "Proteinoplasmatales" Order "Gimiplasmatales" Family "Gimiplasmataceae" Hu et al. 2020
"Candidatus Gimiplasma" Hu et al. 2020 (UA10834) Order "Sysuiplasmatales" Family "Sysuiplasmataceae" Yuan et al. 2021
"Candidatus Sysuiplasma" Yuan et al. 2021 Order Methanomassiliicoccales
Phylogeny of Methanomassiliicoccales[8] [9] [10]
Methanomassiliicoccaceae
Methanomassiliicoccus
Methanomethylophilaceae"
"Candidatus Methanarcanum"
"Candidatus Methanomethylophilus"
"Candidatus Methanogranum"
"Candidatus Methanoplasma"
Family "Methanomixtatrophicaceae" Hua et al. 2019
?"Candidatus Methanomixtatrophicum" Hua et al. 2019
Family Methanomassiliicoccaceae Iino et al. 2013
Methanomassiliicoccus Dridi et al. 2012
Family "Methanomethylophilaceae" Gaci et al. 2014
"Candidatus Methanarcanum" Chibani et al. 2022
"Candidatus Methanogranum" corrig. Iino et al. 2013
"Candidatus Methanomethylophilus" corrig. Borrel et al. 2012
"Candidatus Methanoplasma" corrig. Lang et al. 2015
?"Candidatus Methanospyradousia" Gilroy et al. 2021 Order "Aciduliprofundales" Family "Aciduliprofundaceae" Rinke et al. 2020
Family Thermoplasmataceae Reysenbach 2002
Acidiplasma Golyshina et al. 2009 Cuniculiplasma corrig. Golyshina et al. 2016 Ferroplasma Golyshina et al. 2000 Picrophilus Schleper et al. 1996 ?"Candidatus Scheffleriplasma" Krause et al. 2022
Thermogymnomonas Itoh, Yoshikawa & Takashina 2007 Thermoplasma Darland et al. 1970 Phylum "Halobacteriota"
Phylogeny of Halobacteriota[8] [9] [10]
Archaeoglobi
Archaeoglobales
"Methanoliparia"
"Methanoliparales"
"Syntropharchaeia"
"Syntropharchaeales"
Halobacteriota incertae sedis "Candidatus Methanoinsularis" Ou et al. 2022
"Candidatus Methanoporticola" Ou et al. 2022 Order "Methanoflorentales" Family "Methanoflorentaceae" Mondav et al. 2014
"Candidatus Methanoflorens" Mondav et al. 2014 Class Archaeoglobi Order "Mnemosynellales" Family "Mnemosynellaceae" Adam et al. 2022
?"Candidatus Mnemosynella" Adam et al. 2022 Order Archaeoglobales Family "Allopolytropaceae" corrig. Boyd et al. 2019
?"Candidatus Allopolytropus" corrig. Boyd et al. 2019 ["Candidatus Polytropus" Boyd et al. 2019 non Kirsch 1866 ]
Family Archaeoglobaceae Huber & Stetter 2002
Archaeoglobus Stetter 1988 Ferroglobus Hafenbradl et al. 1997 Geoglobus Kashefi et al. 2002 ?"Candidatus Methanoglobus" Buessecker et al. 2023
?"Candidatus Methanomixotrophus" corrig. Liu et al. 2021
?"Candidatus Methanoproducendum" Hua et al. 2019 Class "Methanoliparia" Order "Methanoliparales" Family "Methanoliparaceae" Borrel et al. 2019
"Candidatus Methanoliparum" Borrel et al. 2019
"Candidatus Methanolliviera" Borrel et al. 2019 Class "Syntropharchaeia" Order "Methanophagales" Family ?"Veteromethanophagaceae" Vulcano et al. 2022
Family "Methanophagaceae" Chadwick et al. 2022
?"Candidatus Methanophaga" Chadwick et al. 2022
?"Candidatus Methanoalium" Chadwick et al. 2022
Family "Methanoxibalbaceae" Laso-Pérez et al. 2022
?"Candidatus Methanoxibalbensis" Laso-Pérez et al. 2022
?"Candidatus Methanospirare" Laso-Pérez et al. 2022 Order "Syntropharchaeales" Family "Syntropharchaeaceae" corrig. (ANME-2 cluster)
"Candidatus Syntropharchaeum" corrig. Laso-Perez et al. 2016 Class "Methanocellia" Order Methanocellales Family Methanocellaceae Sakai et al. 2008
Class "Methanosarcinia" Order Methanotrichales Family Methanotrichaceae Akinyemi et al. 2021
?"Candidatus Methanocrinis" Khomyakova et al. 2023
Methanothrix Huser, Wuhrmann & Zehnder 1983 [Methanosaeta Patel & Sprott 1990 ]
Phylogeny of Methanosarcinales[8] [9] [10]
"Methanocomedenaceae"
"Ca. Methanocomedens"
"Ca. Methanomarinus"
"Ethanoperedentaceae"
"Ca. Ethaniperedens"
"Methanoperedentaceae"
"Ca. Methanoperedens"
"Methanogastraceae"
"Ca. Methanogaster"
Family "Methanocomedenaceae" Chadwick et al. 2022
"Candidatus Methanocomedens" Chadwick et al. 2022 (ANME-2a)
"Candidatus Methanomarinus" Chadwick et al. 2022 (ANME-2b)
Family "Ethanoperedentaceae" (sic) Pallen, Rodriguez-R & Alikhan 2022 (EX4572-44)
"Candidatus Ethaniperedens" corrig. Hahn et al. 2020
Family "Methanoperedentaceae" corrig. Haroon et al. 2013
?"Candidatus Argarchaeum" corrig. Chen et al. 2019 (GOM arc I)
"Candidatus Methanoperedens" Haroon et al. 2013 (ANME-2d, AAA)
Family "Methanogastraceae" corrig. Chadwick et al. 2022 (ANME-2c)
"Candidatus Methanogaster" Chadwick et al. 2022
Family Methanosarcinaceae Balch & Wolfe 1981
Class Methanosarcinia A Order Methanosarcinales_A Family Methermicoccaceae Cheng et al. 2007
Methermicoccus Cheng et al. 2007 Order "Alkanophagales" Family "Alkanophagaceae" ?"Candidatus Alkanophaga" Zehnle et al. 2023
Phylogeny of Methanomicrobiales[8] [9] [10]
"Methanosphaerulaceae"
Methanosphaerula
Family Methanocorpusculaceae Zellner et al. 1989
Family "Methanofollaceae" Chuvochina et al. 2023
Family "Methanosphaerulaceae" Rinke et al. 2020 ex Chuvochina et al. 2023
Methanosphaerula Cadillo-Quiroz et al. 2009
Family Methanospirillaceae Boone et al. 2002
Family Methanoregulaceae Sakai et al. 2012
Family "Methanoculleaceae" Rinke et al. 2020 ex Chuvochina et al. 2023
Family Methanomicrobiaceae Balch & Wolfe 1981
Class "Hikarchaeia" Order "Hikarchaeales" Family "Hikarchaeaceae" Martijn et al. 2020 (MG-IV)
?"Candidatus Hikarchaeum" Martijn et al. 2020 Class "Methanonatronarchaeia" Order "Methanonatronarchaeales" Family Methanonatronarchaeaceae Sorokin et al. 2018
"Candidatus Methanohalarchaeum" Sorokin et al. 2018
Methanonatronarchaeum Sorokin et al. 2018 Class Halobacteria Order "Halorutilales" Family "Halorutilaceae" Durán-Viseras et al. 2023
?"Candidatus Halorutilus" Durán-Viseras et al. 2023 Halobacteriales incertae sedis
Family Haladaptataceae Rinke et al. 2020
Haladaptatus Savage et al. 2007 ?Halomicrococcus Chen et al. 2020
Halorussus Cui et al. 2014
Family Halobacteriaceae ?"Actinoarchaeum " Tang et al. 2023
Halanaeroarchaeum Sorokin et al. 2016 Halarchaeum Minegishi et al. 2010 Halobacterium (Elazari-Volcani 1940) Elazari-Volcani 1957 ["Halobacter " Anderson 1954 ]Halocalculus Minegishi et al. 2015 Halodesulfurarchaeum Sorokin et al. 2017 Salarchaeum Shimane et al. 2011
Family "Salinarchaeaceae" Salinarchaeum Cui et al. 2014
Family "Halostellaceae" Pallen, Rodriguez-R & Alikhan 2022
Family "Natronoarchaeaceae" Sorokin et al. 2022
?"Natranaeroarchaeum " Sorokin et al. 2021
Natronoarchaeum Shimane et al. 2010 Family Natrialbaceae Gupta et al. 2015
Haloarchaeobius Makhdoumi-Kakhki et al. 2012 Halobiforma Hezayen et al. 2002 Halopiger Gutierrez et al. 2007 Halorubellus Cui et al. 2014 ?Halosolutus Sun et al. 2022
Halostagnicola Castillo et al. 2006 Haloterrigena Ventosa et al. 1999 Halovarius Mehrshad et al. 2015 Halovivax Castillo et al. 2006 Natrarchaeobaculum Sorokin et al. 2020 Natrarchaeobius corrig. Sorokin et al. 2020 Natrialba Kamekura & Dyall-Smith 1996 Natribaculum Liu et al. 2015 Natronobacterium Tindall et al. 1984 Natronobiforma Sorokin et al. 2019 Natronococcus Tindall et al. 1984 Natronolimnobius Itoh et al. 2005 Natronolimnohabitans Sorokin et al. 2020 Natrinema McGenity et al. 1998 ?"Natronobeatus " Li et al. 2023
?"Natrononativus " Li et al. 2023
Natronorubrum Xu et al. 1999 ?"Natronosalvus " Tan et al. 2023
Salinadaptatus Xue et al. 2020 ?"Salinilacihabitans " Li et al. 2023
Saliphagus Yin et al. 2017
Family Halococcaceae Gupta et al. 2016
Family Haloarculaceae Halapricum Song et al. 2014 Haloarcula Torreblanca et al. 1986 Halocatena Verma et al. 2020 ?Halococcoides Sorokin et al. 2019
"Haloglomus " Duran-Viseras, Sanchez-Porro & Ventosa 2020
Halomarina Inoue et al. 2011 Halomicroarcula Echigo et al. 2013 Halomicrobium Oren et al. 2002 [Halosiccatus Mehrshad et al. 2016 ]Halorientalis Cui et al. 2011 ?"Halorarius " Sun et al. 2023
Halorhabdus Waino et al. 2000 Halosegnis Duran-Viseras et al. 2022 [Sala Song et al. 2023 non Ross 1937 non Walker 1867 ; Salella Deshmukh & Oren 2023 ]Halosimplex Vreeland et al. 2003 Halovenus Makhdoumi-Kakhki et al. 2012 Natronomonas Kamekura et al. 1997 Salinibaculum Han & Cui 2020 ?Salinirubellus Hou et al. 2018
Salinirussus Cui et al. 2017
Family "Halalkalicoccaceae"
Phylogeny of Haloferacaceae[8] [9] [10]
Halalkalirubrum
"Natronocalculus "
Family Haloferacaceae Gupta et al. 2015
Halalkaliarchaeum Sorokin et al. 2019 "Halalkalirubrum " Zuo et al. 2021
?"Candidatus Halectosymbiota" corrig. Filker et al. 2014
"Halegenticoccus " Liu et al. 2019
Halobaculum Oren et al. 1995 ["Candidatus Halobonum" Ugalde et al. 2013 ]Halobellus Cui et al. 2011 ?Halobium Mori et al. 2016
Haloferax Torreblanca et al. 1986 Halogeometricum Montalvo-Rodriguez et al. 1998 [Halosarcina Savage et al. 2008 ]Halogranum Cui et al. 2010 Halohasta Mou et al. 2013 Halolamina Cui et al. 2011 Halonotius Burns et al. 2010 Haloparvum Chen et al. 2016 Halopelagius Cui et al. 2010 Halopenitus Amoozegar et al. 2012 Haloplanus Elevi Bardavid et al. 2007 Haloprofundus Zhang et al. 2017 Haloquadratum Burns et al. 2007 Halorubrum McGenity & Grant 1996 [Halorubrobacterium Kamekura & Dyall-Smith 1996 ]"Natronocalculus " Sorokin et al. 2022
Salinirubrum corrig. Cui & Qiu 2014 Salinigranum Cui & Zhang 2014 See also References
↑ J.P. Euzéby. "Archaea" . List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/domain/archaea . ↑ Sayers. "Archaea" . National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2157 . Retrieved 2021-03-20 . ↑ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.". Nature Biotechnology 36 (10): 996–1004. doi :10.1038/nbt.4229 . PMID 30148503 . ↑ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea." . Nature Biotechnology 38 (9): 1079–1086. doi :10.1038/s41587-020-0501-8 . PMID 32341564 . https://www.researchgate.net/publication/340954053 . ↑ Chaumeil, PA; Mussig, AJ; Hugenholtz, P; Parks, DH (15 November 2019). "GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database." . Bioinformatics 36 (6): 1925–1927. doi :10.1093/bioinformatics/btz848 . PMID 31730192 . ↑ Almeida, Alexandre; Nayfach, Stephen; Boland, Miguel; Strozzi, Francesco; Beracochea, Martin; Shi, Zhou Jason; Pollard, Katherine S.; Sakharova, Ekaterina et al . (20 July 2020). "A unified catalog of 204,938 reference genomes from the human gut microbiome" . Nature Biotechnology 39 (1): 105–114. doi :10.1038/s41587-020-0603-3 . PMID 32690973 . ↑ Nayfach, Stephen et al . (9 November 2020). "A genomic catalog of Earth's microbiomes" . Nature Biotechnology 39 (4): 499–509. doi :10.1038/s41587-020-0718-6 . PMID 33169036 . ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 8.21 8.22 "GTDB release 08-RS214" . https://gtdb.ecogenomic.org/about#4%7C . ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 9.11 9.12 9.13 9.14 9.15 9.16 9.17 9.18 9.19 9.20 9.21 9.22 "ar53_r214.sp_label" . https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree . ↑ 10.00 10.01 10.02 10.03 10.04 10.05 10.06 10.07 10.08 10.09 10.10 10.11 10.12 10.13 10.14 10.15 10.16 10.17 10.18 10.19 10.20 10.21 10.22 "Taxon History" . https://gtdb.ecogenomic.org/taxon_history/ . ↑ "The LTP" . https://imedea.uib-csic.es/mmg/ltp/#LTP . ↑ "LTP_all tree in newick format" . https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/Tree_LTP_all_12_2021.ntree . ↑ "LTP_12_2021 Release Notes" . https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_12_2021_release_notes.pdf . ↑ 14.0 14.1 14.2 Ruize Xie, Yinzhao Wang, Danyue Huang, Jialin Hou, Liuyang Li, Haining Hu, Xiaoxiao Zhao, Fengping Wang: Expanding Asgard members in the domain of Archaea sheds new light on the origin of eukaryotes. In: Science China Life Sciences , vol. 65, p. 818–829, April 2022. doi:10.1007/s11427-021-1969-6, PMID 34378142. Epub: Aug. 6, 2021. Along with:Njordarchaeota, a new candidate for a sister group to eukaryotes . EurekAlert!, Oct. 20, 2021.
↑ LPSN: Order "Candidatus Freyrarchaeales"
↑ LPSN: Order "Candidatus Njordarchaeales"
↑ 17.0 17.1 17.2
Fabai Wu, Daan R. Speth, Alon Philosof, Antoine Crémière, Aditi Narayanan, Roman A. Barco, Stephanie A. Connon, Jan P. Amend, Igor A. Antoshechkin, Victoria J. Orphan: Unique mobile elements and scalable gene flow at the prokaryote–eukaryote boundary revealed by circularized Asgard archaea genomes. In: Nature Microbiology volume 7, p. 200–212, Jan 13, 2022. doi:10.1038/s41564-021-01039-y, PMID 35027677, PMC 8813620 . See also Extended Data Fig. 2 .
↑ LPSN: Family "Candidatus Sigynarchaeaceae"
Original source: https://en.wikipedia.org/wiki/List of Archaea genera. Read more
