Biology:Nocardiopsis

Nocardiopsis is a bacterial genus from the family Nocardiopsaceae which can produces some antimicrobial compounds, including thiopeptides. Nocardiopsis occur mostly in saline and alkaline soils.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI).

16S rRNA based LTP_10_2024

120 marker proteins based GTDB 10-RS226

Nocardiopsis trehalosi Dolak, Castle & Laborde 1981 ex Evtushenko et al. 2000   Nocardiopsis~     Nocardiopsis mangrovi corrig. Huang et al. 2024     Nocardiopsis sediminis Muangham et al. 2016           Nocardiopsis coralliicola Li et al. 2012       Nocardiopsis halophila Al-Tai & Ruan 1994       Nocardiopsis chromatogenes Li et al. 2006       Nocardiopsis endophytica Chantavorakit et al. 2023     Nocardiopsis suaedae Chantavorakit et al. 2023                 Nocardiopsis composta corrig. Kämpfer, Busse & Rainey 2002     Nocardiopsis potens Yassin et al. 2009           Nocardiopsis akesuensis Gao et al. 2016     Nocardiopsis mwathae Akhwale et al. 2016         Nocardiopsis gilva Li et al. 2006       Nocardiopsis rhodophaea Li et al. 2006     Nocardiopsis rosea Li et al. 2006               Nocardiopsis   N. ansamitocini Zhang et al. 2016         N. nikkonensis Yamamura et al. 2010       N. rhizosphaerae Zhang et al. 2016       N. salina Li et al. 2004       N. coralli Li et al. 2021       N. xinjiangensis Li et al. 2003       N. kunsanensis Chun et al. 2000     N. litoralis Chen et al. 2009                   N. fildesensis Xu et al. 2014         N. flavescens Fang et al. 2011     N. lucentensis Yassin et al. 1993           N. algeriensis Bouras et al. 2015       N. alba Grund & Kroppenstedt 1990         N. quinghaiensis Chen et al. 2008       N. arvandica Hamedi et al. 2011     N. sinuspersici Hamedi et al. 2010           N. halotolerans Al-Zarban et al. 2002       N. akebiae Mo et al. 2024         N. dassonvillei (Brocq-Rousseau 1904) Meyer 1976     N. deserti Asem et al. 2020         N. dassonvillei crassaminis Camacho Pozo et al. 2020     N. synnemataformans Yassin et al. 1997                     N. aegyptia Sabry et al. 2004         N. tropica Evtushenko et al. 2000     N. umidischolae Peltola et al. 2002           N. alkaliphila Hozzein et al. 2004     N. changdeensis Mo et al. 2024           N. eucommiae Mo et al. 2022     N. prasina (Miyashita, Mikami & Arai 1984) Yassin et al. 1997           N. terrae Chen et al. 2012       N. listeri Grund & Kroppenstedt 1990       N. nanhaiensis Pan et al. 2015     N. oceani Pan et al. 2015             N. ganjiahuensis Zhang et al. 2008       N. metallicus Schippers et al. 2002       N. exhalans Peltola et al. 2002     N. valliformis Yang et al. 2008

Nocardiopsis ansamitocini       Nocardiopsis_B Nocardiopsis trehalosi       Nocardiopsis_C   Nocardiopsis mwathae       Nocardiopsis gilva     Nocardiopsis rosea       Nocardiopsis_A     Nocardiopsis composta     Nocardiopsis potens         Nocardiopsis halophila [Nocardiopsis baichengensis Li et al. 2006]       Nocardiopsis chromatogenes       Nocardiopsis endophytica     Nocardiopsis suaedae               Nocardiopsis     "Ca. N. merdipullorum" Gilroy et al. 2021         N. coralli     N. salina         N. kunsanensis [N. litoralis]     N. xinjiangensis                 N. alba       N. alkaliphila     N. listeri           N. terrae         N. eucommiae     N. prasina         N. ganjiahuensis       N. exhalans     N. metallicus                   N. aegyptia     N. lucentensis           N. algeriensis       N. changdeensis     N. flavescens           N. umidischolae         N. quinghaiensis     N. sinuspersici [N. arvandica]         N. halotolerans       Glycomyces fuscus Han et al. 2014       N. dassonvillei [N. deserti]       N. alborubida corrig. Grund & Kroppenstedt 1990     N. synnemataformans

Unassigned species:

• "N. benisuefensis" Hozzein 2003c
• "N. bonnevillensis" Scott et al. 2025
• "N. lambiniae" Nouioui et al. 2024
• "N. oceanisediminis" Kim et al. 2025
• N. protaetiae Liu et al. 2025
• "N. synnemasporogenes" El-Naggar 2014 em. Nouioui et al. 2018
• "N. tangguensis" Lu et al. 2002
• "N. viridoflava" Xie, Liu & Wang 2002b
• "N. yanglingensis" Yan et al. 2011

See also

• List of bacterial orders
• List of bacteria genera

Further reading

• Li, Hong-Wei; Zhi, Xiao-Yang; Yao, Ji-Cheng; Zhou, Yu; Tang, Shu-Kun; Klenk, Hans-Peter; Zhao, Jiao; Li, Wen-Jun et al. (23 April 2013). "Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability". PLOS ONE 8 (4). doi:10.1371/journal.pone.0061528. PMID 23626695. Bibcode: 2013PLoSO...861528L. 
• Zhang, Haibo; Saurav, Kumar; Yu, Ziquan; Mándi, Attila; Kurtán, Tibor; Li, Jie; Tian, Xinpeng; Zhang, Qingbo et al. (24 June 2016). "α-Pyrones with Diverse Hydroxy Substitutions from Three Marine-Derived Nocardiopsis Strains". Journal of Natural Products 79 (6): 1610–1618. doi:10.1021/acs.jnatprod.6b00175. PMID 27300427. Bibcode: 2016JNAtP..79.1610Z. 
• Pan, HQ; Zhang, DF; Li, L; Jiang, Z; Cheng, J; Zhang, YG; Wang, HF; Hu, JC et al. (October 2015). "Nocardiopsis oceani sp. nov. and Nocardiopsis nanhaiensis sp. nov., actinomycetes isolated from marine sediment of the South China Sea.". International Journal of Systematic and Evolutionary Microbiology 65 (10): 3384–91. doi:10.1099/ijsem.0.000425. PMID 26297579. 
• Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. 
• Patrice, Dion; Chandra Shekhar, Nautiyal (2007). Microbiology of Extreme Soils. Springer Science & Business Media. ISBN 978-3-540-74231-9. 
• Horikoshi, Koki (1999). Alkaliphiles. Tokyo: Kodansha. ISBN 90-5702-458-6. 
• Atta-ur-Rahman, edited by (1997). Studies in Natural Products Chemistry Indices Part A.. Burlington: Elsevier. ISBN 0-08-048120-5. 
• Glasby, John S. (1992). Dictionary of antibiotic-producing organisms (1. publ. ed.). New York: Ellis Horwood. ISBN 0-13-210584-5. 
• Staley, Don J. Brenner ... ed. Ed. board James T. (2005). Bergey's manual of systematic bacteriology. (2nd ed.). New York: Springer. ISBN 0-387-28021-9. 

Wikidata ☰ Q19729591 entry