Biology:Turicibacter
Turicibacter is a genus in the Bacillota phylum of bacteria that has most commonly been found in the guts of animals.[1] The genus is named after the city in which it was first isolated from the blood of a human, Zurich (Latin = Turicum), Switzerland.[2]
Phylogeny
The position of Turicibacter within the Bacillota could not be resolved using 16S rRNA gene-based analyses. However, it was tentatively placed in the class Bacilli, then the class Erysipelotrichia.[3]
In a tree built using a concatenated protein alignment containing data from two draft Turicibacter genomes, the group was placed at the base of the class Bacilli.[4] Later analyses that also included amino acid sequences predicted by a complete Turicibacter genome came to the same conclusion.[1]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[5] and National Center for Biotechnology Information (NCBI).[6]
| 16S rRNA based LTP_10_2024[7][8][9] | 120 marker proteins based GTDB 09-RS220[10][11][12] | ||||||||||||||||||
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References
- ↑ 1.0 1.1 "Complete Genome Sequence of Turicibacter sp. Strain H121, Isolated from the Feces of a Contaminated Germ-Free Mouse". Genome Announcements 4 (2): e00114-16. 2016. doi:10.1128/genomeA.00114-16. PMID 27013036.
- ↑ "Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, Gram-positive bacterium". International Journal of Systematic and Evolutionary Microbiology 52: 1263–1266. 2002. doi:10.1099/00207713-52-4-1263. PMID 12148638.
- ↑ Bosshard, PP. "Genus VIII. Turicibacter Bosshard, Zbinden and Altwegg 2002, 1266VP". Bergey’s manual of systematic bacteriology, 2nd ed. The Firmicutes. Springer. pp. 1314–1315.
- ↑ "PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes". Nature Communications 4: 2304. 2013. doi:10.1038/ncomms3304. PMID 23942190.
- ↑ A.C. Parte. "Turicibacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/turicibacter.
- ↑ C.L. Schoch. "Turicibacter". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=191303&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock.
- ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP.
- ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree.
- ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf.
- ↑ "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C.
- ↑ "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree.
- ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/.
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