Biology:Agathobacter

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Agathobacter is a bacterial genus from the family of Lachnospiraceae.[1][2][3][4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[5]

16S rRNA based LTP_10_2024[6][7][8] 120 marker proteins based GTDB 09-RS220[9][10][11]
Agathobacter
 

A. rectalis

 
 

A. ruminis

 
 
Agathobacter
 

"A. faecis" (Duncan et al. 2006) Goris, Cuadrat & Braune 2021

 
 
 

A. rectalis (Hauduroy et al. 1937) Rosero et al. 2016

 
 

A. ruminis Rosero et al. 2016

 
 
 

See also

References

  1. ↑ 1.0 1.1 A.C. Parte. "Agathobacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/agathobacter. 
  2. ↑ (in en) Agathobacter. https://www.uniprot.org/taxonomy/1766253. 
  3. ↑ Parker, Charles Thomas; Garrity, George M (2016). "Nomenclature Abstract for Agathobacter Rosero et al. 2016." (in en). The NamesforLife Abstracts. doi:10.1601/nm.28207. 
  4. ↑ Benada, Oldrˇich; Killer, Jirˇí; Fliegerová, Katerˇina; Mrázek, Jakub; Rosero, Jaime A.; Kopečný, Jan; Sechovcová, Hana; Havlík, Jaroslav (1 February 2016). "Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prévot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows". International Journal of Systematic and Evolutionary Microbiology 66 (2): 768–773. doi:10.1099/ijsem.0.000788. PMID 26619944. 
  5. ↑ Sayers. "Agathobacter". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=1766253&lvl=3&lin=f&keep=1&srchmode=1&unlock. 
  6. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  7. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  8. ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  9. ↑ "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  10. ↑ "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  11. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Wikidata ☰ Q27438818 entry



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