Biology:Butyricicoccus

From HandWiki

Butyricicoccus is a bacterial genus from the family Oscillospiraceae,[1] formerly ranked in the family of Clostridiaceae.[2][3]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[4]

16S rRNA based LTP_10_2024[5][6][7] 120 marker proteins based GTDB 09-RS220[8][9][10]
Butyricicoccus

B. intestinisimiae

B. porcorum

species‑group 2

Butyricicoccus pullicaecorum

Agathobaculum [incl. Butyricicoccus faecihominis]

Butyricicoccus

B. intestinisimiae Li et al. 2022

B. porcorum Trachsel et al. 2018[11]

"Ca. B. stercorigallinarum" Gilroy et al. 2021

species‑group 2
Butyricicoccus

"Ca. B. avistercoris" Gilroy et al. 2021

"Ca. B. avicola" Gilroy et al. 2021

B. pullicaecorum Eeckhaut et al. 2008

"Intestinibacillus"

Agathobaculum [incl. Butyricicoccus faecihominis
Takada et al. 2016]

See also

References

  1. 1.0 1.1 A.C. Parte. "Butyricicoccus". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/butyricicoccus. 
  2. (in en) Butyricicoccus. https://www.uniprot.org/taxonomy/580596. 
  3. Parker, Charles Thomas; Wigley, Sarah; Garrity, George M (2009). Parker, Charles Thomas; Garrity, George M. eds. "Nomenclature Abstract for Butyricicoccus Eeckhaut et al. 2008" (in en). The NamesforLife Abstracts. doi:10.1601/nm.13066. 
  4. Sayers. "Butyricicoccus". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=580596&lvl=3&keep=1&srchmode=1&unlock. 
  5. "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  6. "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  7. "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  8. "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  9. "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree. 
  10. "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 
  11. Trachsel, Julian; Humphrey, Samuel; Allen, Heather K. (2018). "Butyricicoccus porcorum sp. nov., a butyrate-producing bacterium from swine intestinal tract". International Journal of Systematic and Evolutionary Microbiology 68 (5): 1737–1742. doi:10.1099/ijsem.0.002738. PMID 29620502. 

Further reading

Wikidata ☰ Q26219530 entry