Biology:MMP3

From HandWiki
A representation of the 3D structure of the protein myoglobin showing turquoise α-helices.
Generic protein structure example
Stromelysin 1
Identifiers
EC number3.4.24.17
CAS number79955-99-0
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum

Stromelysin-1 also known as matrix metalloproteinase-3 (MMP-3) is an enzyme that in humans is encoded by the MMP3 gene. The MMP3 gene is part of a cluster of MMP genes which localize to chromosome 11q22.3.[1] MMP-3 has an estimated molecular weight of 54 kDa.[2]

Function

Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix proteins and during tissue remodeling in normal physiological processes, such as embryonic development and reproduction, as well as in disease processes, such as arthritis, and tumour metastasis. Most MMPs are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases.[3]

The MMP-3 enzyme degrades collagen types II, III, IV, IX, and X, proteoglycans, fibronectin, laminin, and elastin.[4][5][6] In addition, MMP-3 can also activate other MMPs such as MMP-1, MMP-7, and MMP-9, rendering MMP-3 crucial in connective tissue remodeling.[7] The enzyme is also thought to be involved in wound repair, progression of atherosclerosis, and tumor initiation.

In addition to classical roles for MMP3 in extracellular space, MMP3 can enter in cellular nuclei and control transcription.[8]

Gene regulation

MMP3 itself can enter in nuclei of cells and regulate target gene such as CTGF/CCN2 gene.[8]

Expression of MMP3 is primarily regulated at the level of transcription, where the promoter of the gene responds to various stimuli, including growth factors, cytokines, tumor promoters, and oncogene products.[9] A polymorphism in the promoter of the MMP3 gene was first reported in 1995.[10] The polymorphism is caused by a variation in the number of adenosines located at position -1171 relative to the transcription start site, resulting in one allele having five adenosines (5A) and the other allele having six adenosines (6A). In vitro promoter functional analyses showed that the 5A allele had greater promoter activities as compared with the 6A allele.[7] It has been shown in different studies that individuals carrying the 5A allele have increased susceptibility to diseases attributed to increased MMP expression, such as acute myocardial infarction and abdominal aortic aneurysm.[11][12]

On the other hand, the 6A allele has been found to be associated with diseases characterized by insufficient MMP-3 expression due to a lower promoter activity of the 6A allele, such as progressive coronary atherosclerosis.[7][13][14] The -1171 5A/6A variant has also been associated with congenital anomalies such as cleft lip and palate, where individuals with cleft lip/palate presented significantly more 6A/6A genotypes than controls.[15] Recently, the MMP3 gene was shown to be down-regulated in individuals with cleft lip and palate when compared to controls,[16] reinforcing the nature of cleft lip/palate as a condition resulting from insufficient or defective embryonic tissue remodeling.

Structure

General structure for matrix metalloproteinases.

Most members of the MMP family are organized into three basic, distinctive, and well-conserved domains based on structural considerations: an amino-terminal propeptide; a catalytic domain; and a hemopexin-like domain at the carboxy-terminal. The propeptide consists of approximately 80–90 amino acids containing a cysteine residue, which interacts with the catalytic zinc atom via its side chain thiol group. A highly conserved sequence (. . .PRCGXPD. . .) is present in the propeptide. Removal of the propeptide by proteolysis results in zymogen activation, as all members of the MMP family are produced in a latent form.

The catalytic domain contains two zinc ions and at least one calcium ion coordinated to various residues. One of the two zinc ions is present in the active site and is involved in the catalytic processes of the MMPs. The second zinc ion (also known as structural zinc) and the calcium ion are present in the catalytic domain approximately 12 Å away from the catalytic zinc. The catalytic zinc ion is essential for the proteolytic activity of MMPs; the three histidine residues that coordinate with the catalytic zinc are conserved among all the MMPs. Little is known about the roles of the second zinc ion and the calcium ion within the catalytic domain, but the MMPs are shown to possess high affinities for structural zinc and calcium ions.

TIMP-1 (blue) in complex with MMP-3 (red). Note the Cys1 (green) TIMP-1 chelating to the catalytic zinc (purple). Calcium ions (yellow) are also shown. Based on the PyMOL rendering of PDB 1UEA. For simplicity, the other MMP-3 monomer complexed with its respective TIMP-1 is not shown.

The catalytic domain of MMP-3 can be inhibited by tissue inhibitors of metalloproteinases (TIMPs). The n-terminal fragment of the TIMP binds in the active site cleft much like the peptide substrate would bind. The Cys1 residue of the TIMP chelates to the catalytic zinc and forms hydrogen bonds with one of the carboxylate oxygens of the catalytic glutamate residue (Glu202, see mechanism below). These interactions force the zinc-bound water molecule that is essential to the enzyme's function to leave the enzyme. The loss of the water molecule and the blocking of the active site by TIMP disable the enzyme.[17]

The hemopexin-like domain of MMPs is highly conserved and shows sequence similarity to the plasma protein, hemopexin. The hemopexin-like domain has been shown to play a functional role in substrate binding and/or in interactions with the tissue inhibitors of metalloproteinases (TIMPs), a family of specific MMP protein inhibitors.[18]

Mechanism

The mechanism for MMP-3 is a variation on a larger theme seen in all matrix metalloproteinases. In the active site, a water molecule is coordinated to a glutamate residue (Glu202) and one of the zinc ions present in the catalytic domain. First, the coordinated water molecule performs a nucleophilic attack on the peptide substrate's scissile carbon while the glutamate simultaneously abstracts a proton from the water molecule. The abstracted proton is then removed from the glutamate by the nitrogen of the scissile amide. This forms a tetrahedral gem-diolate intermediate that is coordinated to the zinc atom.[19] In order for the amide product to be released from the active site, the scissile amide must abstract a second proton from the coordinated water molecule.[20] Alternatively, it has been shown for thermolysin (another metalloproteinase) that the amide product can be released in its neutral (R-NH2) form.[21][22] The carboxylate product is released after a water molecule attacks the zinc ion and displaces the carboxylate product.[23] The release of the carboxylate product is thought to be the rate-limiting step in the reaction.[22]

In addition to the water molecule directly involved in the mechanism, a second water molecule is suggested to be a part of the MMP-3 active site. This auxiliary water molecule is thought to stabilize the gem-diolate intermediate as well as the transition states by lowering the activation energy for their formation.[19][24] This is demonstrated in the mechanism and reaction coordinate diagram below.

The catalytic mechanism for MMP-3 with an auxiliary water molecule. Charges shown are formal charges.

Disease relevance

MMP-3 has been implicated in exacerbating the effects of traumatic brain injury (TBI) through its disruption of the blood-brain barrier (BBB). Different studies have shown that after the brain undergoes trauma and inflammation has begun, MMP production in the brain is increased.[25][26] In a study conducted using MMP-3 wild type (WT) and knockout (KO) mice, MMP-3 was shown to increase BBB permeability after traumatic injury.[27] The WT mice were shown to have lower claudin-5 and occludin levels than the KO mice after TBI. Claudin and occludin are proteins that are essential for the formation of the tight junctions between the cells of the blood-brain barrier.[28][29] Tissue from uninjured WT and KO mice brains was also treated with active MMP-3. Both the WT and KO tissues showed a drop in claudin-5, occludin, and laminin-α1 (a basal lamina protein), suggesting that MMP-3 directly destroys tight junction and basal lamina proteins.

MMP-3 also does damage to the blood-spinal cord barrier (BSCB), the functional equivalent of the blood-brain barrier,[30] after spinal cord injury (SCI). In a similar study conducted using MMP-3 WT and KO mice, MMP-3 was shown to increase BSCB permeability, with the WT mice showing greater BSCB permeability than the KO mice after spinal cord injury. The same study also found decreased BSCB permeability when spinal cord tissues were treated with a MMP-3 inhibitor. These results suggest that the presence of MMP-3 serves to increase BSCB permeability after SCI.[31] The study showed that MMP-3 accomplishes this damage by degrading claudin-5, occludin, and ZO-1 (another tight junction protein), similar to how MMP-3 damages the BBB.

The increase in blood-brain barrier and blood-spinal cord barrier permeability allows for more neutrophils to infiltrate the brain and spinal cord at the site of inflammation.[27] Neutrophils carry MMP-9.,[32] which has also been shown to degrade occludin.[33] This leads to further disruption of the BBB and BSCB[34]


References

  1. ↑ "Entrez Gene: MMP3 matrix metallopeptidase 3 (stromelysin 1, progelatinase)". https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=4314. 
  2. ↑ "MMP3 (human)". https://www.phosphosite.org/proteinAction.action?id=19050&showAllSites=true. 
  3. ↑ "Matrix metalloproteinases. A review". Cellular and Molecular Biology 36 (2): 131–53. 1990. PMID 2165861. 
  4. ↑ "Stromelysin, a connective tissue-degrading metalloendopeptidase secreted by stimulated rabbit synovial fibroblasts in parallel with collagenase. Biosynthesis, isolation, characterization, and substrates". The Journal of Biological Chemistry 260 (22): 12367–76. October 1985. doi:10.1016/S0021-9258(17)39034-8. PMID 2995374. 
  5. ↑ "A metalloproteinase from human rheumatoid synovial fibroblasts that digests connective tissue matrix components. Purification and characterization". The Journal of Biological Chemistry 261 (30): 14245–55. October 1986. doi:10.1016/S0021-9258(18)67011-5. PMID 3095317. 
  6. ↑ "The tissue metalloproteinase family and the inhibitor TIMP: a study using cDNAs and recombinant proteins". Annals of the Rheumatic Diseases 49 (Suppl 1): 469–79. June 1990. PMID 2197998. 
  7. ↑ 7.0 7.1 7.2 "Progression of coronary atherosclerosis is associated with a common genetic variant of the human stromelysin-1 promoter which results in reduced gene expression". The Journal of Biological Chemistry 271 (22): 13055–60. May 1996. doi:10.1074/jbc.271.22.13055. PMID 8662692. 
  8. ↑ 8.0 8.1 "Novel transcription-factor-like function of human matrix metalloproteinase 3 regulating the CTGF/CCN2 gene". Molecular and Cellular Biology 28 (7): 2391–413. Apr 2008. doi:10.1128/MCB.01288-07. PMID 18172013. 
  9. ↑ "Metalloproteinases and their inhibitors in matrix remodeling". Trends in Genetics 6 (4): 121–5. Apr 1990. doi:10.1016/0168-9525(90)90126-Q. PMID 2132731. 
  10. ↑ "Preliminary report: genetic variation in the human stromelysin promoter is associated with progression of coronary atherosclerosis". British Heart Journal 73 (3): 209–15. Mar 1995. doi:10.1136/hrt.73.3.209. PMID 7727178. 
  11. ↑ "Stromelysin promoter 5A/6A polymorphism is associated with acute myocardial infarction". Circulation 99 (21): 2717–9. Jun 1999. doi:10.1161/01.cir.99.21.2717. PMID 10351963. 
  12. ↑ "Genetic analysis of MMP3, MMP9, and PAI-1 in Finnish patients with abdominal aortic or intracranial aneurysms". Biochemical and Biophysical Research Communications 265 (2): 563–8. Nov 1999. doi:10.1006/bbrc.1999.1721. PMID 10558909. 
  13. ↑ "The 5A/6A polymorphism in the promoter of the stromelysin-1 (MMP-3) gene predicts progression of angiographically determined coronary artery disease in men in the LOCAT gemfibrozil study. Lopid Coronary Angiography Trial". Atherosclerosis 139 (1): 49–56. Jul 1998. doi:10.1016/S0021-9150(98)00053-7. PMID 9699891. 
  14. ↑ "Effect of the stromelysin-1 promoter on efficacy of pravastatin in coronary atherosclerosis and restenosis". The American Journal of Cardiology 83 (6): 852–6. Mar 1999. doi:10.1016/S0002-9149(98)01073-X. PMID 10190398. 
  15. ↑ "MMP gene polymorphisms as contributors for cleft lip/palate: association with MMP3 but not MMP1". Archives of Oral Biology 52 (10): 954–60. Oct 2007. doi:10.1016/j.archoralbio.2007.04.005. PMID 17537400. 
  16. ↑ "Human stem cell cultures from cleft lip/palate patients show enrichment of transcripts involved in extracellular matrix modeling by comparison to controls". Stem Cell Reviews 7 (2): 446–57. Jun 2011. doi:10.1007/s12015-010-9197-3. PMID 21052871. 
  17. ↑ "Mechanism of inhibition of the human matrix metalloproteinase stromelysin-1 by TIMP-1". Nature 389 (6646): 77–81. Sep 1997. doi:10.1038/37995. PMID 9288970. Bibcode: 1997Natur.389...77G. 
  18. ↑ "Matrix metalloproteinases: structures, evolution, and diversification". FASEB Journal 12 (25n26): 1075–95. Sep 1998. doi:10.1142/S0217984998001256. PMID 9737711. 
  19. ↑ 19.0 19.1 "Catalytic mechanism of matrix metalloproteinases: two-layered ONIOM study". Inorganic Chemistry 41 (22): 5659–66. Nov 2002. doi:10.1021/ic0255656. PMID 12401069. 
  20. ↑ "An interactive computer graphics study of thermolysin-catalyzed peptide cleavage and inhibition by N-carboxymethyl dipeptides". Biochemistry 23 (24): 5730–41. Nov 1984. doi:10.1021/bi00319a011. PMID 6525336. 
  21. ↑ "A theoretical study of the mechanism for peptide hydrolysis by thermolysin". Journal of Biological Inorganic Chemistry 7 (3): 284–98. Mar 2002. doi:10.1007/s007750100295. PMID 11935352. 
  22. ↑ 22.0 22.1 "Mechanism of proteolysis in matrix metalloproteinase-2 revealed by QM/MM modeling". Journal of Computational Chemistry 36 (21): 1621–30. Aug 2015. doi:10.1002/jcc.23977. PMID 26132652. 
  23. ↑ "Mechanistic studies on the human matrix metalloproteinase stromelysin". Biochemistry 31 (44): 10757–62. Nov 1992. doi:10.1021/bi00159a016. PMID 1420192. 
  24. ↑ "Matrilysin-inhibitor complexes: common themes among metalloproteases". Biochemistry 34 (20): 6602–10. May 1995. doi:10.1021/bi00020a004. PMID 7756291. 
  25. ↑ "Matrix metalloproteinase-3 expression profile differentiates adaptive and maladaptive synaptic plasticity induced by traumatic brain injury". Journal of Neuroscience Research 84 (4): 768–81. Sep 2006. doi:10.1002/jnr.20986. PMID 16862547. 
  26. ↑ "Overexpression of copper and zinc superoxide dismutase in transgenic mice prevents the induction and activation of matrix metalloproteinases after cold injury-induced brain trauma". Journal of Cerebral Blood Flow and Metabolism 20 (1): 130–8. Jan 2000. doi:10.1097/00004647-200001000-00017. PMID 10616801. 
  27. ↑ 27.0 27.1 "Blood-brain barrier disruption by stromelysin-1 facilitates neutrophil infiltration in neuroinflammation". Neurobiology of Disease 23 (1): 87–96. Jul 2006. doi:10.1016/j.nbd.2006.02.006. PMID 16624562. 
  28. ↑ "Claudin-1 and -2: novel integral membrane proteins localizing at tight junctions with no sequence similarity to occludin". The Journal of Cell Biology 141 (7): 1539–50. Jun 1998. doi:10.1083/jcb.141.7.1539. PMID 9647647. 
  29. ↑ "Size-selective loosening of the blood-brain barrier in claudin-5-deficient mice". The Journal of Cell Biology 161 (3): 653–60. May 2003. doi:10.1083/jcb.200302070. PMID 12743111. 
  30. ↑ "The blood-spinal cord barrier: morphology and clinical implications". Annals of Neurology 70 (2): 194–206. Aug 2011. doi:10.1002/ana.22421. PMID 21674586. 
  31. ↑ "Matrix metalloproteinase-3 promotes early blood-spinal cord barrier disruption and hemorrhage and impairs long-term neurological recovery after spinal cord injury". The American Journal of Pathology 184 (11): 2985–3000. Nov 2014. doi:10.1016/j.ajpath.2014.07.016. PMID 25325922. 
  32. ↑ "Gelatinase B functions as regulator and effector in leukocyte biology". Journal of Leukocyte Biology 69 (6): 851–9. Jun 2001. doi:10.1189/jlb.69.6.851. PMID 11404367. 
  33. ↑ "Matrix metalloproteinases in early diabetic retinopathy and their role in alteration of the blood-retinal barrier". Laboratory Investigation; A Journal of Technical Methods and Pathology 85 (5): 597–607. May 2005. doi:10.1038/labinvest.3700251. PMID 15711567. 
  34. ↑ "Neutrophils mediate blood-spinal cord barrier disruption in demyelinating neuroinflammatory diseases". Journal of Immunology 193 (5): 2438–54. Sep 2014. doi:10.4049/jimmunol.1400401. PMID 25049355. 

Further reading

External links



Retrieved from "https://handwiki.org/wiki/index.php?title=Biology:MMP3&oldid=3610208"