Biology:Oceanobacillus
Oceanobacillus is a Gram-positive, rod-shaped and motile bacteria genus from the family of Bacillaceae with a peritrichous flagella.[1][2][3][4] Oceanobacillus species are commonly found in saline environment.[4]
Characteristics of Oceanobacillus spp.
S.I. Paul et al. (2021)[4] isolated and characterized four species of the genus Oceanobacillus from marine sponges of the Saint Martin's Island Area of the Bay of Bengal, Bangladesh. Colony, morphological, physiological, and biochemical characteristics of Oceanobacillus spp. are shown in the Table below.[4]
| Test type | Test | Characteristics |
|---|---|---|
| Colony characters | Size | Small/Medium |
| Type | Round | |
| Color | Creamy | |
| Shape | Convex | |
| Morphological characters | Shape | Rod |
| Physiological characters | Motility | + |
| Growth at 6.5% NaCl | + | |
| Biochemical characters | Gram's staining | + |
| Oxidase | + | |
| Catalase | + | |
| Oxidative-Fermentative | O/F | |
| Motility | + | |
| Methyl Red | – | |
| Voges-Proskauer | – | |
| Indole | – | |
| H2S Production | – | |
| Urease | – | |
| Nitrate reductase | +/– | |
| β-Galactosidase | +/– | |
| Hydrolysis of | Gelatin | +/– |
| Aesculin | +/– | |
| Casein | +/– | |
| Tween 40 | + | |
| Tween 60 | + | |
| Tween 80 | +/– | |
| Acid production from | Glycerol | +/– |
| Galactose | +/– | |
| D-Glucose | + | |
| D-Fructose | + | |
| D-Mannose | + | |
| Mannitol | +/– | |
| N-Acetylglucosamine | + | |
| Amygdalin | +/– | |
| Maltose | + | |
| D-Melibiose | +/– | |
| D-Trehalose | + | |
| Glycogen | +/– | |
| D-Turanose | + |
Note: + = Positive, – =Negative, O = Oxidative, F = Fermentative
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[5]
| 16S rRNA based LTP_10_2024[6][7][8] | 120 marker proteins based GTDB 09-RS220[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Unassigned species:
- "O. aidingensis" Liu & Yang 2014
- "O. cibarius" Roh 2007q
- "O. gochujangensis" Jang et al. 2014
- "O. halophilum" Tang et al. 2014 non Amoozegar et al. 2016
- "O. sediminis" Zhao et al. 2022
See also
- List of Bacteria genera
- List of bacterial orders
References
- ↑ 1.0 1.1 A.C. Parte. "Oceanobacillus". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/oceanobacillus.
- ↑ UniProt
- ↑ Paul De Vos, ed (2009). Bergey's manual of systematic bacteriology. (2nd ed.). Dordrecht: Springer. ISBN 978-0-387-68489-5.
- ↑ 4.0 4.1 4.2 4.3 Paul, Sulav Indra; Rahman, Md. Mahbubur; Salam, Mohammad Abdus; Khan, Md. Arifur Rahman; Islam, Md. Tofazzal (2021-12-15). "Identification of marine sponge-associated bacteria of the Saint Martin's island of the Bay of Bengal emphasizing on the prevention of motile Aeromonas septicemia in Labeo rohita" (in en). Aquaculture 545. doi:10.1016/j.aquaculture.2021.737156. ISSN 0044-8486. Bibcode: 2021Aquac.54537156P. https://www.sciencedirect.com/science/article/abs/pii/S004484862100819X.
- ↑ C.L. Schoch. "Oceanobacillus". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=182709&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock.
- ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP.
- ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree.
- ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf.
- ↑ "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C.
- ↑ "bac120_r220.sp_labels". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree.
- ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/.
Further reading
- Kim, YG; Choi, DH; Hyun, S; Cho, BC (February 2007). "Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core.". International Journal of Systematic and Evolutionary Microbiology 57 (Pt 2): 409–13. doi:10.1099/ijs.0.64375-0. PMID 17267988.
- Roux, Véronique; Million, Matthieu; Robert, Catherine; Magne, Alix; Raoult, Didier (15 December 2013). "Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov.". Standards in Genomic Sciences 9 (2): 370–384. doi:10.4056/sigs.4267953. PMID 24976893. Bibcode: 2013SGenS...9..370R.
- Lagier, Jean-Christophe; Khelaifia, Saber; Azhar, Esam Ibraheem; Croce, Olivier; Bibi, Fehmida; Jiman-Fatani, Asif Ahmad; Yasir, Muhammad; Helaby, Huda Ben et al. (29 October 2015). "Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut". Standards in Genomic Sciences 10 (1): 91. doi:10.1186/s40793-015-0081-2. PMID 26523201. Bibcode: 2015SGenS..10...91L.
- Identifying Microbes by Mass Spectrometry Proteomics. Hoboken: CRC Press. 2013. ISBN 978-1-4665-0496-7.
- Pabulo H, Rampelotto (2016). Biotechnology of Extremophiles:: Advances and Challenges. Springer. ISBN 978-3-319-13521-2.
Wikidata ☰ Q19930848 entry
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