Biology:Signal peptidase

From HandWiki
SPC structure as ribbon view
Structure of the human signal peptidase complex (PDB code 7P2P)
Peptidase_S26
Identifiers
SymbolPeptidase_S26
PfamPF10502
Pfam clanCL0299
InterProIPR019533
MEROPSS26
OPM superfamily137
OPM protein1t7d
Membranome323
Signal peptidase complex subunit 3
Identifiers
SymbolSP3
PfamPF04573
InterProIPR007653
Membranome369
Signal peptidase I
Identifiers
EC number3.4.21.89
CAS number65979-36-4
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO
Signal peptidase II
Identifiers
EC number3.4.23.36
CAS number171715-14-3
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO

Signal peptidases are enzymes that convert secretory and some membrane proteins to their mature or pro forms by cleaving their signal peptides from their N-termini.

Signal peptidases were initially observed in endoplasmic reticulum (ER)-derived membrane fractions isolated from mouse myeloma cells.[1] The key observation by César Milstein and colleagues was that immunoglobulin light chains were produced in a higher molecular weight form, which became processed by the ER membrane fraction. This finding was directly followed by the discovery of the translocation machinery.[2] Signal peptidases are also found in prokaryotes as well as the protein import machinery of mitochondria and chloroplasts.[3]

All signal peptidases described so far are serine proteases. The active site that endoproteolytically cleaves signal peptides from translocated precursor proteins is located at the extracytoplasmic site of the membrane. The eukaryotic signal peptidase is an integral membrane protein complex. The first subunit, which was identified by yeast genetics is Sec11, a 17 kDa membrane protein that is associated with three subunits termed Spc3p (21 kDa), Spc2p (18 kDa) and Spc1p (11 kDa). Sec11 is the only essential factor for signal peptide processing as can be deduced from a growth defect upon its deletion.[4] The functional signal peptidase complex was first purified from a canine ER membrane fraction.[5] The five mammalian subunits, originally named according to their molecular weight are referred to as SPCS1 (SPC12), SEC11A (SPC18), SEC11C (SPC21), SPCS3 (SPC22/23) and SPCS2 (SPC25). These subunits assemble into two distinct paralogous complexes differing in their catalytic subunit SEC11A and SEC11C, respectively, which exhibit largely identical structures.[6] The SPC structure suggests that the enzyme has a transmembrane domain that is only accessible to signal peptides with their characteristically short helical segment.

References

  1. "A possible precursor of immunoglobulin light chains". Nature 239 (91): 117–120. September 1972. doi:10.1038/newbio239117a0. PMID 4507519. 
  2. "Transfer of proteins across membranes. I. Presence of proteolytically processed and unprocessed nascent immunoglobulin light chains on membrane-bound ribosomes of murine myeloma". The Journal of Cell Biology 67 (3): 835–851. December 1975. doi:10.1083/jcb.67.3.835. PMID 811671. 
  3. "Signal peptidases". Chemical Reviews 102 (12): 4549–4580. December 2002. doi:10.1021/cr010166y. PMID 12475201. 
  4. "SEC11 is required for signal peptide processing and yeast cell growth". The Journal of Cell Biology 106 (4): 1035–1042. April 1988. doi:10.1083/jcb.106.4.1035. PMID 3283143. 
  5. "Purification of microsomal signal peptidase as a complex". Proceedings of the National Academy of Sciences of the United States of America 83 (3): 581–585. February 1986. doi:10.1073/pnas.83.3.581. PMID 3511473. Bibcode1986PNAS...83..581E. 
  6. "Structure of the human signal peptidase complex reveals the determinants for signal peptide cleavage". Molecular Cell 81 (19): 3934–3948.e11. October 2021. doi:10.1016/j.molcel.2021.07.031. PMID 34388369. 

External links

Further reading