Biology:Clostridioides difficile (bacteria)

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Short description: Species of bacteria


Clostridioides difficile
Clostridium difficile colonies.png
C. difficile colonies on a blood agar plate
Clostridium difficile 01.jpg
Electron micrograph of the bacterium
Scientific classification edit
Domain: Bacteria
Phylum: Bacillota
Class: Clostridia
Order: Eubacteriales
Family: Peptostreptococcaceae
Genus: Clostridioides
Species:
C. difficile
Binomial name
Clostridioides difficile
(Hall & O'Toole, 1935) Lawson & Rainey, 2016
Synonyms
  • Bacillus difficilis Hall & O'Toole, 1935[1]
  • (Hall & O'Toole, 1935) Prévot, 1938[2] Clostridium difficile

Clostridioides difficile (syn. Clostridium difficile), also known as C. difficile, or C. diff (/siː dɪf/), is Gram-positive species of spore-forming bacteria.[3] Clostridioides spp. are anaerobic, motile bacteria, ubiquitous in nature and especially prevalent in soil. Its vegetative cells are rod-shaped, pleomorphic, and occur in pairs or short chains. Under the microscope, they appear as long, irregular (often drumstick- or spindle-shaped) cells with a bulge at their terminal ends (forms subterminal spores). Under Gram staining, C. difficile cells are Gram-positive and show optimum growth on blood agar at human body temperatures in the absence of oxygen. C. difficile is catalase- and superoxide dismutase-negative, and produces two types of toxins: enterotoxin A and cytotoxin B, which disrupts cytoskeleton signal transductions in the host.[4] Under stress conditions, the bacteria produce spores that are able to tolerate extreme conditions that the active bacteria cannot tolerate.[5]

C. difficile is an important emerging human pathogen; according to the CDC, in 2017 there were 223,900 cases in hospitalized patients and 12,800 deaths in the United States.[6] Although C. difficile is commonly known as a hospital and antibiotic associated pathogen, at most one third of infections can be traced to transmission from an infected person in hospitals,[7] and only a small number of antibiotics are directly associated with an elevated risk of developing a C. difficile infection (CDI), namely clindamycin, fluoroquinolones and cephalosporins.[8][9] The majority of infections are acquired outside of hospitals, and most antibiotics have similar elevated risk of infection on par with many non-antibiotic risk factors, such as using stool softeners and receiving an enema.[10]

C. difficile can also become established in the human colon without causing disease.[11] Although early estimates indicated that C. difficile was present in 2–5% of the adult population,[5] more recent research indicates colonization is closely associated with a history of unrelated diarrheal illnesses, such as food poisoning or laxative abuse.[12] Individuals with no history of gastrointestinal disturbances appear unlikely to become asymptomatic carriers. These carriers are thought to be a major reservoir of infection.[13]

Taxonomy

The species was transferred from the genus Clostridium to Clostridioides in 2016, thus giving it the binomial Clostridioides difficile.[14][15][16] This new name reflects the taxonomic differences between this species and members of the genus Clostridium, while maintaining the common name as C. diff.[17] (As of 2018), the only other species in this new genus is Clostridioides mangenotii (formerly known as Clostridium mangenotii).[18] A July 2013 paper from Environmental Microbiology proposed to rename the species Peptoclostridium difficile.[19][20]

Human pathogen

Pathogenic C. difficile strains produce multiple toxins.[21] The best-characterized are enterotoxin (C. difficile toxin A) and cytotoxin (C. difficile toxin B), both of which may produce diarrhea and inflammation in infected patients (C. difficile colitis), although their relative contributions have been debated. The diarrhea may range from a few days of intestinal fluid loss to life-threatening pseudomembranous colitis, which is associated with intense inflammation of the colon and formation of pseudomembranes on the intestinal mucosal surface.[5] Toxins A and B are glucosyltransferases that target and inactivate the Rho family of GTPases. Toxin B (cytotoxin) induces actin depolymerization by a mechanism correlated with a decrease in the ADP-ribosylation of the low molecular mass GTP-binding Rho proteins.[22] There is also a binary toxin (AB toxin), but its role in disease is not fully understood.[23]

Additional virulence factors include an adhesin factor that mediates the binding to human colonic cells and a hyaluronidase.[24] The bacterium also produces the chemical para-cresol, which inhibits the growth of other microbes in its vicinity and allows it to outcompete normal human gut flora.[25]

Antibiotic treatment of C. diff infections may be difficult, due both to antibiotic resistance and physiological factors of the bacterium (spore formation, protective effects of the pseudomembrane).[5] The emergence of a new, highly toxic strain of C. difficile, resistant to fluoroquinolone antibiotics, such as ciprofloxacin and levofloxacin, said to be causing geographically dispersed outbreaks in North America, was reported in 2005.[26] The U.S. Centers for Disease Control in Atlanta warned of the emergence of an epidemic strain with increased virulence, antibiotic resistance, or both.[27] Resistance to other antibiotics such as metronidazole, the first choice of antimicrobial drug when treating CDI, has been observed in up to 12% of clinical isolates, so as treatment with various antibiotics continues, more diverse and stronger resistances will continue to evolve in C. difficile populations, further complicating attempts at effective treatment.[28]

Transmission

C. difficile is transmitted from person to person by the fecal-oral route, shed in faeces. Any surface, device, or material (e.g., toilets, bathing tubs, and electronic rectal thermometers) that becomes contaminated with faeces may serve as a reservoir for the C. difficile spores. C. difficile can live for long periods of time on surfaces.[29] The organism forms heat-resistant spores that are not killed by alcohol-based hand cleansers or routine surface cleaning, thus, these spores survive in clinical environments for long periods. Because of this, the bacterium may be cultured from almost any surface. Once spores are ingested, their acid resistance allows them to pass through the stomach unscathed. They germinate and multiply into vegetative cells in the colon upon exposure to bile acids. Consequently, the World Health Organization advocates the use of soap in addition to alcohol solutions to limit the spread of the spores.[30] Sporulation was shown to be significantly reduced after inactivation of C. diffiicile's DNA methyltransferase CamA,[31] raising the prospect of developing a drug that may inhibit this bacterium in a specific manner.

Susceptibility to colonization appears to be triggered by diarrheal illnesses, such as food poisoning or laxative abuse; people without a history of diarrheal illnesses who are exposed to C. difficile spores will not necessarily become carriers.[12] Once people are colonized by C. difficile, they remain carriers for year-long time scales, but the day-to-day abundance of C. difficile fluctuates considerably - fluctuating from being below the limit of detection to high levels of shedding from one day to the next. GI disturbances in carriers appear to trigger periods of increased shedding which may be an important factor for transmission.

Host range

C. difficile infects pigs, calves, and humans, and inhabits a natural reservoir of soil, faeces of domestic animals and humans, sewage, the human intestinal tract, and retail meat.[32]

A 2015 CDC study estimated that C. diff afflicted almost half a million Americans and caused 29,000 deaths in 2011. The study estimated that 40% of cases began in nursing homes or community health-care settings, while 24% occurred in hospitals.[33]

C. difficile is common in the human digestive system. However, it is a poor competitor, and is often outcompeted for nutrients by other bacteria in the digestive system. As a result, C. difficile is kept to a manageable number. If the sudden introduction of antibiotic disrupts the microbiome, C. difficile may be able to grow as a result of many of its competitors being killed off. The incubation period is 5–10 days, with a range of 1 day to weeks following antibiotic treatment for antibiotic associated diarrhea. Additionally, carriage of C. difficile with high levels of toxins is common in young children, while disease is rare. The production of one or even both toxins is not always sufficient for producing symptoms.[34]

Signs and symptoms

Symptoms of C. difficile infection include: diarrhea (at least three loose bowel movements a day), dehydration, abdominal pain that can be severe, loss of appetite, and nausea.[35]

Host immune response

The C. difficile secreted toxins A (TcdA) and B (TcdB), contain immunogenic antigens that are recognised by antibodies and T cells. However, the levels of anti-TcdA and -TcdB IgG antibodies have not been able to discriminate healthy individuals from patients with C. difficile infection, meaning they have limited clinical use.[36][37] Recent work has shown these toxins are also recognised by helper CD4+ T cells, predominantly by the Th17 helper cells, which are important in maintaining a healthy gut environment, although in patients with severe infection these cells are impaired.[38] Interestingly, individuals with severe C. difficile infection had significantly more toxin-specific T cells compared to those with mild infection, indicating T cells are playing a key role in fighting this infection. This is further evidenced by the recovery of the toxin-specific Th17 cells following Fecal microbiota transplant of patients with severe disease.[39]

Treatment

Patients being treated with antibiotics when symptoms begin should stop taking them, if possible. This break in antibiotic therapy can sometimes lead to spontaneous resolution of symptoms. Patients who do not respond to the cessation of broad-spectrum antibiotics will need to be treated with antibiotics capable of killing C. difficile spores. Primary infections are typically treated with vancomycin, with a usual dosage of 125 mg every 6 hours.[40] The vancomycin regimen has replaced the traditional use of metronidazole due to its greater efficacy, safety profile, and lower recurrence rates. In patients who cannot tolerate vancomycin, fidaxomicin is an acceptable option with similar efficacy and even lower recurrence rates than vancomycin.[41] In cases of fulminant CDI, adjuvant therapy with parenteral metronidazole plus oral vancomycin or fidaxomicin is suggested.[42]

About 20% of patients who successfully complete therapy of primary infection with metronidazole or vancomycin will experience a relapse. A fraction of those patients will experience continuous reoccurrences of the infection. The first relapse of C. difficile is usually treated with the same antibiotic used to treat the primary infection. Any subsequent infections should not be treated with metronidazole. Occasionally, a standard 10-day course of oral vancomycin will not work. In these cases, a vancomycin taper is the preferred treatment. Patients take decreasing doses of vancomycin over a period of up to 3 months, depending on the severity of the infection.[35]

Each subsequent relapse of C. difficile tends to be more severe than previous infections. Long-term treatment with a vancomycin taper supplemented with probiotics, especially Saccharomyces boulardii, is associated with a higher rate of success.[43]

After three relapses, patients may be treated with oral fidaxomicin, a narrow-spectrum antibiotic. The usual dosage is 200 mg twice a day orally for 10 days. Fidaxomicin is considered to be superior to vancomycin for severe CDI.[44] The major downside of treatment with fidaxomicin is the cost of medication. A 10-day course may cost up to US$3500.

Patients who do not respond to traditional antibiotic therapy may be eligible for a Fecal microbiota transplant (FMT). Healthcare providers can transfer stool from a healthy person to the colon of a patient with repeated CDI. This process is the most successful treatment for severe CDI with a cure rate around 93%. Recurrence rates of CDI in patients treated with a FMT are generally low, around 19%, which makes it very effective at treating chronic CDI cases. However, in some cases, flares of inflammatory bowel disease are a possible side effect of the treatment.[45] Long-term effects of FMT are unknown, as the procedure has only been FDA approved since 2011 and relatively few procedures have been performed. If transplantation is not an option, removal of the infected part of the colon can cure CDI.[44][35]

Strains

In 2005, molecular analysis led to the identification of the C. difficile strain type characterized as group BI by restriction endonuclease analysis, as North American pulse-field-type NAP1 by pulsed-field gel electrophoresis and as ribotype 027; the differing terminology reflects the predominant techniques used for epidemiological typing. This strain is referred to as C. difficile BI/NAP1/027.[46]

As of 2016, the NAP1 strain has been replaced by novel strains in some areas of British Columbia. These novel strains include NAP2 and NAP4, and some strains that do not have a NAP designation. The frequency of these novel strains increased from 2008 to 2013 in one studied region, displacing the originally more common and recognizable NAP1 bacteria.[47]

Two strains, ribotypes RT078 and RT027, can live on low concentrations of the sugar trehalose; both strains became more common after trehalose was introduced as a food additive in the early 2000s, thus increasing dietary trehalose intake.[48]

Genome

Genomic information
NCBI genome ID535
Ploidyhaploid
Genome size4.3 Mb
Number of chromosomes1
Year of completion2005

The first complete genome sequence of a C. difficile strain was first published in 2005 by Sanger Institute in the UK. This was of the strain 630, a virulent and multiple drug-resistant strain isolated in Switzerland in 1982. Scientists at Sanger Institute have sequenced genomes of about 30 C. difficile isolates using next-generation sequencing technologies from 454 Life Sciences and Illumina.[49]

Researchers at McGill University in Montreal sequenced the genome of the highly virulent Quebec strain of C. difficile in 2005 using ultra-high throughput sequencing technology. The tests involved doing 400,000 DNA parallel-sequencing reactions of the bacterium's genome, which had been fragmented for sequencing. These sequences were assembled computationally to form a complete genome sequence.[26][50]

In 2012, scientists at University of Oxford sequenced C. difficile genomes from 486 cases arising over four years in Oxfordshire using next-generation sequencing technologies from Illumina.[51]

Epigenome

C. difficile has a highly diverse epigenome, with 17 high-quality methylation motifs reported so far, the majority pertaining to the 6mA type. Methylation at one of these motifs - CAAAAA, was shown to impact sporulation, a key step in C. difficile disease transmission, as well as cell length, biofilm formation, and host colonization.[31]

Bacteriophage

At least eight mainly temperate bacteriophages have been isolated from C. difficile, ranging in genome size from about 30 to about 60 kb.[52] Both environmentally and clinically derived C. difficile strains carry a diverse and prevalent set of prophages.[52]

Etymology and pronunciation

See Clostridioides difficile infection § Etymology and pronunciation.

References

  1. ↑ Hall, Ivan C.; O'Toole, Elizabeth (1935). "Intestinal flora in new-born infants: with a description of a new pathogenic anaerobe, Bacillus difficilis". American Journal of Diseases of Children 49 (2): 390–402. doi:10.1001/archpedi.1935.01970020105010. 
  2. ↑ Prévot, A.-R. (1938). "Études de systématique bactérienne. IV. Critique de la conception actuelle du genre Clostridium". Annales de l'Institut Pasteur 61 (1): 84. https://gallica.bnf.fr/ark:/12148/bpt6k5846341v/f79.item. 
  3. ↑ "Clostridium difficile: A Cause of Diarrhea in Children". JAMA Pediatrics 167 (6): 592. June 2013. doi:10.1001/jamapediatrics.2013.2551. PMID 23733223. 
  4. ↑ di Masi, Alessandra; Ascenzi, Paolo; Siarakas, Steven; Petrosillo, Nicola; Di Bella, Stefano (2016). "Clostridium difficile Toxins A and B: Insights into Pathogenic Properties and Extraintestinal Effects". Toxins (Basel) 8 (5): 134. doi:10.3390/toxins8050134. PMID 27153087. 
  5. ↑ 5.0 5.1 5.2 5.3 Sherris Medical Microbiology (4th ed.). McGraw Hill. 2004. pp. 322–4. ISBN 978-0-8385-8529-0. https://archive.org/details/sherrismedicalmi00ryan. 
  6. ↑ "Clostridioides difficile Infection | HAI | CDC" (in en-us). 2020-01-02. https://www.cdc.gov/hai/organisms/cdiff/cdiff_infect.html. 
  7. ↑ Eyre, David W.; Cule, Madeleine L.; Wilson, Daniel J.; Griffiths, David; Vaughan, Alison; O'Connor, Lily; Ip, Camilla L.C.; Golubchik, Tanya et al. (2013-09-26). "Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing". New England Journal of Medicine 369 (13): 1195–1205. doi:10.1056/NEJMoa1216064. ISSN 0028-4793. PMID 24066741. 
  8. ↑ Guh, Alice Y.; Adkins, Susan Hocevar; Li, Qunna; Bulens, Sandra N.; Farley, Monica M.; Smith, Zirka; Holzbauer, Stacy M.; Whitten, Tory et al. (2017-10-01). "Risk Factors for Community-Associated Clostridium difficile Infection in Adults: A Case-Control Study" (in en). Open Forum Infectious Diseases 4 (4): ofx171. doi:10.1093/ofid/ofx171. PMID 29732377. 
  9. ↑ Brown, Kevin A.; Khanafer, Nagham; Daneman, Nick; Fisman, David N. (2013). "Meta-Analysis of Antibiotics and the Risk of Community-Associated Clostridium difficile Infection" (in en). Antimicrobial Agents and Chemotherapy 57 (5): 2326–2332. doi:10.1128/AAC.02176-12. ISSN 0066-4804. PMID 23478961. 
  10. ↑ McFarland, Lynne V.; Surawicz, Christina M.; Stamm, Walter E. (1990-09-01). "Risk Factors for Clostridium difficile Carriage and C. difficile-Associated Diarrhea in a Cohort of Hospitalized Patients" (in en). The Journal of Infectious Diseases 162 (3): 678–684. doi:10.1093/infdis/162.3.678. ISSN 0022-1899. PMID 2387993. https://academic.oup.com/jid/article/162/3/678/823547. 
  11. ↑ McFarland, Lynne V.; Mulligan, Maury E.; Kwok, Richard Y.Y.; Stamm, Walter E. (1989-01-26). "Nosocomial Acquisition of Clostridium difficile Infection" (in en). New England Journal of Medicine 320 (4): 204–210. doi:10.1056/NEJM198901263200402. ISSN 0028-4793. PMID 2911306. 
  12. ↑ 12.0 12.1 VanInsberghe, David; Elsherbini, Joseph A.; Varian, Bernard; Poutahidis, Theofilos; Erdman, Susan; Polz, Martin F. (2020-02-10). "Diarrhoeal events can trigger long-term Clostridium difficile colonization with recurrent blooms" (in en). Nature Microbiology 5 (4): 642–650. doi:10.1038/s41564-020-0668-2. ISSN 2058-5276. PMID 32042128. https://www.nature.com/articles/s41564-020-0668-2. 
  13. ↑ Eyre, David W.; Griffiths, David; Vaughan, Alison; Golubchik, Tanya; Acharya, Milind; O’Connor, Lily; Crook, Derrick W.; Walker, A. Sarah et al. (2013-11-12). Chang, Yung-Fu. ed. "Asymptomatic Clostridium difficile Colonisation and Onward Transmission" (in en). PLOS ONE 8 (11): e78445. doi:10.1371/journal.pone.0078445. ISSN 1932-6203. PMID 24265690. Bibcode: 2013PLoSO...878445E. 
  14. ↑ Oren, Aharon; Garrity, George M. (2017). "List of new names and new combinations previously effectively, but not validly, published". International Journal of Systematic and Evolutionary Microbiology 67 (9): 3140–3143. doi:10.1099/ijsem.0.002278. PMID 28891789. 
  15. ↑ Lawson, Paul A.; Citron, Diane M.; Tyrrell, Kerin L.; Finegold, Sydney M. (August 2016). "Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O'Toole 1935) Prévot 1938". Anaerobe 40: 95–99. doi:10.1016/j.anaerobe.2016.06.008. ISSN 1095-8274. PMID 27370902. 
  16. ↑ Zhu, Duolong; Sorg, Joseph A.; Sun, Xingmin (2018). "Clostridioides difficile Biology: Sporulation, Germination, and Corresponding Therapies for C. difficile Infection" (in en). Frontiers in Cellular and Infection Microbiology 8: 29. doi:10.3389/fcimb.2018.00029. ISSN 2235-2988. PMID 29473021. 
  17. ↑ Lawson, Paul A.; Citron, Diane M.; Tyrrell, Kerin L.; Finegold, Sydney M. (August 2016). "Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O'Toole 1935) Prévot 1938". Anaerobe 40: 95–99. doi:10.1016/j.anaerobe.2016.06.008. ISSN 1075-9964. PMID 27370902. 
  18. ↑ Galperin, Michael Y.; Brover, Vyacheslav; Tolstoy, Igor; Yutin, Natalya (2016). "Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov.". International Journal of Systematic and Evolutionary Microbiology 66 (12): 5506–5513. doi:10.1099/ijsem.0.001548. PMID 27902180. 
  19. ↑ "A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia". Environ. Microbiol. 15 (10): 2631–41. 2013. doi:10.1111/1462-2920.12173. PMID 23834245. 
  20. ↑ Gerard J. Tortora; Berdell R. Funke; Christine L. Case (2015-01-13). Microbiology: An Introduction. Pearson Education. ISBN 978-0-13-392339-1. 
  21. ↑ Di Bella, Stefano; Ascenzi, Paolo; Siarakas, Steven; Petrosillo, Nicola; di Masi, Alessandra (2016-01-01). "Clostridium difficile Toxins A and B: Insights into Pathogenic Properties and Extraintestinal Effects". Toxins 8 (5): 134. doi:10.3390/toxins8050134. ISSN 2072-6651. PMID 27153087. 
  22. ↑ "The low molecular mass GTP-binding protein Rh is affected by toxin a from Clostridium difficile". The Journal of Clinical Investigation 95 (3): 1026–31. 1995. doi:10.1172/JCI117747. PMID 7883950. 
  23. ↑ "Binary Bacterial Toxins: Biochemistry, Biology, and Applications of Common Clostridium and Bacillus Proteins". Microbiology and Molecular Biology Reviews 68 (3): 373–402, table of contents. 2004. doi:10.1128/MMBR.68.3.373-402.2004. PMID 15353562. 
  24. ↑ [Medical Micriobiology, Fifth Edition, Patrick Murray, Elsevier Mosby, 2005, page 412]
  25. ↑ "The chemical weapon that helps bacterium wreak havoc in the gut". Nature 561 (7723): 288. 14 September 2018. doi:10.1038/d41586-018-06650-4. Bibcode: 2018Natur.561S.288.. https://www.nature.com/articles/d41586-018-06650-4. Retrieved 8 October 2018. 
  26. ↑ 26.0 26.1 "A predominantly clonal multi-institutional outbreak of Clostridium difficile-associated diarrhea with high morbidity and mortality". The New England Journal of Medicine 353 (23): 2442–9. December 2005. doi:10.1056/NEJMoa051639. PMID 16322602. 
  27. ↑ McDonald LC (August 2005). "Clostridium difficile: responding to a new threat from an old enemy". Infection Control and Hospital Epidemiology 26 (8): 672–5. doi:10.1086/502600. PMID 16156321. https://www.cdc.gov/ncidod/dhqp/pdf/infDis/Cdiff_ICHE08_05.pdf. 
  28. ↑ Saeed S. Banawas (21 February 2018). "Clostridium difficile Infections: A Global Overview of Drug Sensitivity and Resistance Mechanisms". BioMed Research International 2018: 8414257. doi:10.1155/2018/8414257. PMID 29682562. 
  29. ↑ "Clostridium difficile Infection Information for Patients | HAI | CDC". https://www.cdc.gov/hai/organisms/cdiff/cdiff-patient.html. 
  30. ↑ "WHO Guidelines on Hand Hygiene in Health Care: a Summary". 2009. p. 31. https://www.who.int/gpsc/5may/tools/who_guidelines-handhygiene_summary.pdf. 
  31. ↑ 31.0 31.1 Oliveira, Pedro H.; Ribis, John W.; Garrett, Elizabeth M.; Trzilova, Dominika; Kim, Alex; Sekulovic, Ognjen; Mead, Edward A.; Pak, Theodore et al. (2020). "Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis" (in en). Nature Microbiology 5 (1): 166–180. doi:10.1038/s41564-019-0613-4. ISSN 2058-5276. PMID 31768029. 
  32. ↑ Gould, L. Hannah; Limbago, Brandi (2010). "Clostridium difficile in Food and Domestic Animals: A New Foodborne Pathogen?". Clinical Infectious Diseases 51 (5): 577–82. doi:10.1086/655692. PMID 20642351. 
  33. ↑ Belluck, Pam (February 25, 2015). "Death Toll From C. Difficile Is Raised". The New York Times. https://www.nytimes.com/2015/02/26/us/death-toll-from-bacteria-is-raised.html?_r=0. 
  34. ↑ [Medical Microbiology, Fifth Edition, Patrick Murray, Elsevier Mosby, 2005, page 412]
  35. ↑ 35.0 35.1 35.2 "Could you have deadly diarrhea (C. Diff)?". 2019-01-04. https://www.cdc.gov/hai/organisms/cdiff/cdiff-patient.html. 
  36. ↑ Monaghan, Tanya M; Negm, Ola H; MacKenzie, Brendon; Hamed, Mohamed R; Shone, Clifford C; Humphreys, David P; Acharya, K Ravi; Wilcox, Mark H (July 2017). "High prevalence of subclass-specific binding and neutralizing antibodies against Clostridium difficile toxins in adult cystic fibrosis sera: possible mode of immunoprotection against symptomatic C. difficile infection". Clinical and Experimental Gastroenterology 10: 169–175. doi:10.2147/CEG.S133939. PMID 28765714. 
  37. ↑ Wullt, M.; Norén, T.; Ljungh, Å.; Åkerlund, T. (September 2012). "IgG Antibody Response to Toxins A and B in Patients with Clostridium difficile Infection". Clinical and Vaccine Immunology 19 (9): 1552–1554. doi:10.1128/CVI.00210-12. PMID 22787196. 
  38. ↑ Cook, Laura; Rees, William D.; Wong, May Q.; Kwok, William W.; Levings, Megan K.; Steiner, Theodore S. (March 2021). "Recurrent Clostridioides difficile Infection Is Associated With Impaired T Helper Type 17 Immunity to C difficile Toxin B". Gastroenterology 160 (4): 1410–1413.e4. doi:10.1053/J.GASTRO.2020.11.043. PMID 33253683. 
  39. ↑ Cook, Laura; Rees, William D.; Wong, May Q.; Peters, Hannah; Levings, Megan K.; Steiner, Theodore S. (May 2021). "Fecal Microbiota Transplantation for Recurrent Clostridioides difficile Infection Enhances Adaptive Immunity to C difficile Toxin B". Gastroenterology 160 (6): 2155–2158.e4. doi:10.1053/J.GASTRO.2021.01.009. PMID 33444574. 
  40. ↑ |last7=Dubberke|first7=Erik R.|last8=Garey|first8=Kevin W.|last9=Gould|first9=Carolyn V.|date=2018-03-19|title=Clinical Practice Guidelines for Clostridium difficile Infection in Adults and Children: 2017 Update by the Infectious Diseases Society of America (IDSA) and Society for Healthcare Epidemiology of America (SHEA)|journal=Clinical Infectious Diseases |volume=66|issue=7|pages=e1–e48|doi=10.1093/cid/cix1085|issn=1537-6591|pmc=6018983|pmid=29462280}}
  41. ↑ Mullane, Kathleen M.; Miller, Mark A.; Weiss, Karl; Lentnek, Arnold; Golan, Yoav; Sears, Pamela S.; Shue, Youe-Kong; Louie, Thomas J. et al. (September 2011). "Efficacy of fidaxomicin versus vancomycin as therapy for Clostridium difficile infection in individuals taking concomitant antibiotics for other concurrent infections". Clinical Infectious Diseases 53 (5): 440–447. doi:10.1093/cid/cir404. ISSN 1537-6591. PMID 21844027. 
  42. ↑ Shane, Andi L.; Mody, Rajal K.; Crump, John A.; Tarr, Phillip I.; Steiner, Theodore S.; Kotloff, Karen; Langley, Joanne M.; Wanke, Christine et al. (2017-11-29). "2017 Infectious Diseases Society of America Clinical Practice Guidelines for the Diagnosis and Management of Infectious Diarrhea". Clinical Infectious Diseases 65 (12): e45–e80. doi:10.1093/cid/cix669. ISSN 1537-6591. PMID 29053792. 
  43. ↑ "Treatment of Recurrent Clostridium difficile Colitis with Vancomycin and Saccharomyces boulardii". The American Journal of Gastroenterology. http://www.optibacprobiotics.sg/uploads/surawicz_et_al_(1989)_treatment_of_recurrent_clostridium_difficile_colitis_with_vancomycin_and_saccharomyces_boulardii_optibac_probiotics_www.optibacprobiotics.co.uk.pdf. 
  44. ↑ 44.0 44.1 Surawicz, Christina M; Brandt, Lawrence J; Binion, David G; Ananthakrishnan, Ashwin N; Curry, Scott R; Gilligan, Peter H; McFarland, Lynne V; Mellow, Mark et al. (2013-02-26). "Guidelines for Diagnosis, Treatment and Prevention of Clostridium difficile Infections". The American Journal of Gastroenterology 108 (4): 478–498. doi:10.1038/ajg.2013.4. ISSN 0002-9270. PMID 23439232. http://www.nature.com/articles/ajg20134. 
  45. ↑ Chen, Yu-Gen; Zheng, Xiao; Zhou, Jin-Yong; Wu, Jing; Jiang, Feng; Zhang, Dan; Zhou, Qun; Chen, Tuo (2018-05-25). "Effect of Faecal Microbiota Transplantation for Treatment of Clostridium difficile Infection in Patients With Inflammatory Bowel Disease: A Systematic Review and Meta-Analysis of Cohort Studies". Journal of Crohn's and Colitis 12 (6): 710–717. doi:10.1093/ecco-jcc/jjy031. ISSN 1873-9946. PMID 29528385. 
  46. ↑ "Clostridium difficile infection: New developments in epidemiology and pathogenesis". Nature Reviews. Microbiology 7 (7): 526–36. July 2009. doi:10.1038/nrmicro2164. PMID 19528959. 
  47. ↑ Jassem, Agatha; Prystajecky, Natalie; Marra, Fawziah; Kibsey, Pamela; Tan, Kennard; Umlandt, Patricia; Janz, Loretta; Champagne, Sylvie et al. (29 Mar 2016). "Characterization of Clostridium difficile Strains in British Columbia, Canada: A Shift from NAP1 Majority (2008) to Novel Strain Types (2013) in One Region.". Canadian Journal of Infectious Diseases and Medical Microbiology 2016: 8207418. doi:10.1155/2016/8207418. PMID 27366181. 
  48. ↑ Collins, J.; Robinson, C.; Danhof, H.; Knetsch, C. W.; van Leeuwen, H. C.; Lawley, T. D.; Auchtung, J. M.; Britton, R. A. (2018). "Dietary trehalose enhances virulence of epidemic Clostridium difficile". Nature 553 (7688): 291–294. doi:10.1038/nature25178. ISSN 0028-0836. PMID 29310122. Bibcode: 2018Natur.553..291C. 
  49. ↑ "Evolutionary dynamics of Clostridium difficile over short and long time scales". Proceedings of the National Academy of Sciences of the United States of America 107 (16): 7527–32. April 2010. doi:10.1073/pnas.0914322107. PMID 20368420. Bibcode: 2010PNAS..107.7527H. 
  50. ↑ Scientists map C. difficile strain – Institute of Public Affairs, Montreal
  51. ↑ "Microevolutionary analysis of Clostridium difficile genomes to investigate transmission". Genome Biology 13 (12): R118. December 2012. doi:10.1186/gb-2012-13-12-r118. PMID 23259504. PMC 4056369. http://genomebiology.com/content/pdf/gb-2012-13-12-r118.pdf. Retrieved 2014-08-30. 
  52. ↑ 52.0 52.1 "Clostridium difficile phages: Still difficult?". Frontiers in Microbiology 5: 184. 2014. doi:10.3389/fmicb.2014.00184. PMID 24808893. 

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