Biology:Halorhodopsin
| Halorhodopsin | |
|---|---|
 Halorhodopsin Cartoon Visualization by Jawahar Swaminathan and MSD staff at the European Bioinformatics Institute | |
| Identifiers | |
| Symbol | Bac_rhodopsin |
| InterPro | CD15243 |
| SCOP2 | 8071317 / SCOPe / SUPFAM |
| TCDB | 3.E.1.2.2 |
| OPM superfamily | 6 |
| OPM protein | 76 |
Halorhodopsin is a seven-transmembrane retinylidene protein from microbial rhodopsin family. It is a chloride-specific light-activated ion pump found in archaea known as halobacteria. It is activated by green light wavelengths of approximately 578nm.[1] Halorhodopsin also shares sequence similarity to channelrhodopsin, a light-gated ion channel.
Halorhodopsin contains the essential light-isomerizable vitamin A derivative all-trans-retinal. Due to the dedication towards discovering the structure and function of this moleculc, halorhodopsin is one of the few membrane proteins whose crystal structure is known. Halorhodopsin uses the energy of green/yellow light to move chloride ions into the cell, overcoming the membrane potential. Beside chlorides it transports other halides and nitrates into the cell. Potassium chloride uptake by cells helps to maintain osmotic balance during cell growth. By performing the same task, light-driven anion pumps can considerably reduce the use of metabolic energy. Halorhodopsin has been the subject of much study and its structure is accurately known. Its properties are similar to those of bacteriorhodopsin, and these two light-driven ion pumps transport cations and anions in opposite directions.
Halorhodopsin isoforms can be found in multiple species of halobacteria, including Halobacterium salinarum, and Natronobacterium pharaonis. Much ongoing research is exploring these differences, and using them to parse apart the photocycle and pump properties. After bacteriorhodopsin, halorhodopsin may be the best type I (microbial) opsin studied. Peak absorbance of the halorhodopsin retinal complex is about 570 nm.
Just as the blue-light activated ion channel channelrhodopsin-2 opens up the ability to activate excitable cells (such as neurons, muscle cells, pancreatic cells, and immune cells) with brief pulses of blue light, halorhodopsin opens up the ability to silence excitable cells with brief pulses of yellow light. Thus halorhodopsin and channelrhodopsin together enable multiple-color optical activation, silencing, and desynchronization of neural activity, creating a powerful neuroengineering toolbox.[2][3]
Halorhodopsin from Natronomonas (NpHR) has been used to achieve inhibition of action potentials in neurons in mammalian systems. Since light activation of NpHR leads to an influx of chloride ions which is a part of the natural process for generating hyperpolarization, NpHR induced inhibition works very well in neurons. Original NpHR channels when expressed in mammalian cells, showed a tendency to get accumulated in the endoplasmic reticulum of the cells.[4] To overcome the sub-cellular localization issues, an ER export motif was added to the NpHR sequence. This modified NpHR (called eNpHR2.0) was utilized successfully to drive aggregate-free, high level expression of NpHR in vivo.[5] However, even the modified form of NpHR showed poor localization at the cell membrane. To achieve higher membrane-localization it was further modified by addition of a golgi export signal and membrane trafficking signal from a potassium channel (Kir2.1). The addition of Kir2.1 signal significantly improved the membrane localization of NpHR and this engineered form of NpHR was labeled eNpHR3.0 [6]
History
Halorhodopsin was discovered in 1980 in Halobacterium salinarum, a salt-loving (halophilic) type of archaeon.[7]
Etymology
The name Halorhodopsin is of Greek origin, the halo- prefix emerging from ἅλς (háls) meaning "salt" or "sea".[8] The suffix -rhodopsin originates from ῥόδον (rhódon, “rose”), due to its pinkish color, and ὄψις (ópsis, “sight”).[9]
Structure
Halorhodopsin folds into a seven-transmembrane helix topology and has a similar tertiary structure (but not primary sequence structure) to vertebrate rhodopsins, the pigments that sense light in the retina.[10]
Applications
Halorhodopsin has been used in optogenetics to hyperpolarize (inhibit) specific neurons. Optogenetics has been proposed as therapeutic approach to neurological conditions for which current treatment methods are not always effective, including epilepsy and Parkinson's disease.[11] NpHR has been used to inhibit excitatory neurons in the subthalamic nucleus of hemiparkinsonian rats, lesioned using the neurotoxin 6-OHDA.[11]
References
- ↑ "Halorhodopsin". 8 April 2023. https://www.biochem.mpg.de/6523045/Protein_HR.
- ↑ "Multimodal fast optical interrogation of neural circuitry". Nature 446 (7136): 633–639. April 2007. doi:10.1038/nature05744. PMID 17410168.
- ↑ "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE 2 (3): e299. March 2007. doi:10.1371/journal.pone.0000299. PMID 17375185.
- ↑ "eNpHR: a Natronomonas halorhodopsin enhanced for optogenetic applications". Brain Cell Biology 36 (1–4): 129–39. August 2008. doi:10.1007/s11068-008-9027-6. PMID 18677566.
- ↑ Gradinaru, Viviana; Mogri, M.; Thompson, K.R.; Henderson, J.M.; Deisseroth, K (2009). "Optical deconstruction of parkinsonian neural circuitry". Science 324 (5925): 354–359. doi:10.1126/science.1167093. PMID 19299587.
- ↑ Gradinaru, Viviana; Feng Zhang; Charu Ramakrishnan; Joanna Mattis; Rohit Prakash; Ilka Diester; Inbal Goshen; Kimberly R. Thompson et al. (2010). "Molecular and Cellular Approaches for Diversifying and Extending Optogenetics". Cell 141 (1): 154–165. doi:10.1016/j.cell.2010.02.037. PMID 20303157.
- ↑ Matsuno-Yagi, Akemi; Mukohata, Yasuo (1980-01-01). "ATP synthesis linked to light-dependent proton uptake in a red mutant strain of Halobacterium lacking bacteriorhodopsin" (in en). Archives of Biochemistry and Biophysics 199 (1): 297–303. doi:10.1016/0003-9861(80)90284-2. ISSN 0003-9861. https://www.sciencedirect.com/science/article/pii/0003986180902842.
- ↑ "halo-" (in en), Wiktionary, 2023-03-17, https://en.wiktionary.org/w/index.php?title=halo-&oldid=72007809, retrieved 2023-04-08
- ↑ "rhodopsin" (in en), Wiktionary, 2023-03-05, https://en.wiktionary.org/w/index.php?title=rhodopsin&oldid=71579866, retrieved 2023-04-08
- ↑ "Halorhodopsin". 8 April 2023. https://www.biochem.mpg.de/6523045/Protein_HR.
- ↑ 11.0 11.1 Ji, Zhi-Gang; Ishizuka, Toru; Yawo, Hiromu (2013-01-01). "Channelrhodopsins—Their potential in gene therapy for neurological disorders" (in en). Neuroscience Research. Photo-transduction proteins and their optogenetic applications in neuroscience 75 (1): 6–12. doi:10.1016/j.neures.2012.09.004. ISSN 0168-0102. https://www.sciencedirect.com/science/article/pii/S0168010212001770.
External links
- Synthetic Neurobiology Group, MIT: Halorhodopsin mediating optical silencing of neurons
- Halorhodopsin at the US National Library of Medicine Medical Subject Headings (MeSH)
- Optogenetics Resource Center
- OpenOptogenetics.org, an open wiki about optogenetics.
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