Chemistry:Retinal

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All-trans-retinal
Skeletal formula of retinal
Ball-and-stick model of the retinal molecule
Names
IUPAC name
Retinal
Systematic IUPAC name
(2E,4E,6E,8E)-3,7-Dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenal
Other names
  • Retinene
  • Retinaldehyde
  • Vitamin A aldehyde
  • RAL
Identifiers
3D model (JSmol)
ChEBI
ChemSpider
UNII
Properties
C20H28O
Molar mass 284.443 g·mol−1
Appearance Orange crystals from petroleum ether[1]
Melting point 61 to 64 °C (142 to 147 °F; 334 to 337 K)[1]
Nearly insoluble
Solubility in fat Soluble
Related compounds
Related compounds
 retinol; retinoic acid; beta-carotene; dehydroretinal; 3-hydroxyretinal; 4-hydroxyretinal
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
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Infobox references
Tracking categories (test):

Retinal (also known as retinaldehyde) is a polyene chromophore. Retinal, bound to proteins called opsins, is the chemical basis of visual phototransduction, the light-detection stage of visual perception (vision).

Some microorganisms use retinal to convert light into metabolic energy. In fact, a recent study suggests most living organisms on our planet ~3 billion years ago used retinal to convert sunlight into energy rather than chlorophyll. Since retinal absorbs mostly green light and transmits purple light, this gave rise to the Purple Earth Hypothesis.[2]

There are many forms of vitamin A — all of which are converted to retinal, which cannot be made without them. Retinal itself is considered to be a form of vitamin A when eaten by an animal. The number of different molecules that can be converted to retinal varies from species to species. Retinal was originally called retinene,[3] and was renamed[4] after it was discovered to be vitamin A aldehyde.[5][6]

Vertebrate animals ingest retinal directly from meat, or they produce retinal from carotenoids — either from α-carotene or β-carotene — both of which are carotenes. They also produce it from β-cryptoxanthin, a type of xanthophyll. These carotenoids must be obtained from plants or other photosynthetic organisms. No other carotenoids can be converted by animals to retinal. Some carnivores cannot convert any carotenoids at all. The other main forms of vitamin A — retinol and a partially active form, retinoic acid — may both be produced from retinal.

Invertebrates such as insects and squid use hydroxylated forms of retinal in their visual systems, which derive from conversion from other xanthophylls.

Vitamin A metabolism

Living organisms produce retinal by irreversible oxidative cleavage of carotenoids.[7]

For example:

beta-carotene + O2 → 2 retinal,

catalyzed by a beta-carotene 15,15'-monooxygenase[8] or a beta-carotene 15,15'-dioxygenase.[9]

Just as carotenoids are the precursors of retinal, retinal is the precursor of the other forms of vitamin A. Retinal is interconvertible with retinol, the transport and storage form of vitamin A:

retinal + NADPH + H+ ⇌ retinol + NADP+
retinol + NAD+ ⇌ retinal + NADH + H+,

catalyzed by retinol dehydrogenases (RDHs)[10] and alcohol dehydrogenases (ADHs).[11]

Retinol is called vitamin A alcohol or, more often, simply vitamin A. Retinal can also be oxidized to retinoic acid:

retinal + NAD+ + H2O → retinoic acid + NADH + H+ (catalyzed by RALDH)
retinal + O2 + H2O → retinoic acid + H2O2 (catalyzed by retinal oxidase),

catalyzed by retinal dehydrogenases[12] also known as retinaldehyde dehydrogenases (RALDHs)[11] as well as retinal oxidases.[13]

Retinoic acid, sometimes called vitamin A acid, is an important signaling molecule and hormone in vertebrate animals.

Vision

Retinal is a conjugated chromophore. In the human eye, retinal begins in an 11-cis-retinal configuration, which — upon capturing a photon of the correct wavelength — straightens out into an all-trans-retinal configuration. This configuration change pushes against an opsin protein in the retina, which triggers a chemical signaling cascade, which results in perception of light or images by the human brain. The absorbance spectrum of the chromophore depends on its interactions with the opsin protein to which it is bound, so that different retinal-opsin complexes will absorb photons of different wavelengths (i.e., different colors of light).

Opsins

An opsin protein surrounds a molecule of 11-cis retinal, awaiting the arrival of a photon. Once the retinal molecule captures a photon, its configuration change causes it to push against the surrounding opsin protein which may cause the opsin to send a chemical signal to the human brain indicating that light has been detected. Retinal is then converted back to its 11-cis configuration by ATP phosphorylation, and the cycle begins again.
Animal GPCR rhodopsin (rainbow-colored) embedded in a lipid bilayer (heads red and tails blue) with transducin below it. Gtα is colored red, Gtβ blue, and Gtγ yellow. There is a bound GDP molecule in the Gtα-subunit and a bound retinal (black) in the rhodopsin. The N-terminus terminus of rhodopsin is red and the C-terminus blue. Anchoring of transducin to the membrane has been drawn in black.

Retinal is bound to opsins, which are G protein-coupled receptors (GPCRs).[14][15] Opsins, like other GPCRs, have seven transmembrane alpha-helices connected by six loops. They are found in the photoreceptor cells in the retina of eye. The opsin in the vertebrate rod cells is rhodopsin. The rods form disks, which contain the rhodopsin molecules in their membranes and which are entirely inside of the cell. The N-terminus head of the molecule extends into the interior of the disk, and the C-terminus tail extends into the cytoplasm of the cell. The opsins in the cone cells are OPN1SW, OPN1MW, and OPN1LW. The cones form incomplete disks that are part of the plasma membrane, so that the N-terminus head extends outside of the cell. In opsins, retinal binds covalently to a lysine[16] in the seventh transmembrane helix[17][18][19] through a Schiff base.[20][21] Forming the Schiff base linkage involves removing the oxygen atom from retinal and two hydrogen atoms from the free amino group of lysine, giving H2O. Retinylidene is the divalent group formed by removing the oxygen atom from retinal, and so opsins have been called retinylidene proteins.

Opsins are prototypical G protein-coupled receptors (GPCRs).[22] Cattle rhodopsin, the opsin of the rod cells, was the first GPCR to have its amino acid sequence[23] and 3D-structure (via X-ray crystallography) determined.[18] Cattle rhodopsin contains 348 amino acid residues. Retinal binds as chromophore at Lys296.[18][23] This lysine is conserved in almost all opsins, only a few opsins have lost it during evolution.[24] Opsins without the retinal binding lysine are not light sensitive.[25][26][27] Such opsins may have other functions.[26][24]

Although mammals use retinal exclusively as the opsin chromophore, other groups of animals additionally use four chromophores closely related to retinal: 3,4-didehydroretinal (vitamin A2), (3R)-3-hydroxyretinal, (3S)-3-hydroxyretinal (both vitamin A3), and (4R)-4-hydroxyretinal (vitamin A4). Many fish and amphibians use 3,4-didehydroretinal, also called dehydroretinal. With the exception of the dipteran suborder Cyclorrhapha (the so-called higher flies), all insects examined use the (R)-enantiomer of 3-hydroxyretinal. The (R)-enantiomer is to be expected if 3-hydroxyretinal is produced directly from xanthophyll carotenoids. Cyclorrhaphans, including Drosophila, use (3S)-3-hydroxyretinal.[28][29] Firefly squid have been found to use (4R)-4-hydroxyretinal.

Visual cycle

Main page: Biology:Visual cycle
Visual cycle

The visual cycle is a circular enzymatic pathway, which is the front-end of phototransduction. It regenerates 11-cis-retinal. For example, the visual cycle of mammalian rod cells is as follows:

  1. all-trans-retinyl ester + H2O → 11-cis-retinol + fatty acid; RPE65 isomerohydrolases;[30]
  2. 11-cis-retinol + NAD+ → 11-cis-retinal + NADH + H+; 11-cis-retinol dehydrogenases;
  3. 11-cis-retinal + aporhodopsin → rhodopsin + H2O; forms Schiff base linkage to lysine, -CH=N+H-;
  4. rhodopsin + hν → metarhodopsin II (i.e., 11-cis photoisomerizes to all-trans):
    (rhodopsin + hν → photorhodopsin → bathorhodopsin → lumirhodopsin → metarhodopsin I → metarhodopsin II);
  5. metarhodopsin II + H2O → aporhodopsin + all-trans-retinal;
  6. all-trans-retinal + NADPH + H+ → all-trans-retinol + NADP+; all-trans-retinol dehydrogenases;
  7. all-trans-retinol + fatty acid → all-trans-retinyl ester + H2O; lecithin retinol acyltransferases (LRATs).[31]

Steps 3, 4, 5, and 6 occur in rod cell outer segments; Steps 1, 2, and 7 occur in retinal pigment epithelium (RPE) cells.

RPE65 isomerohydrolases are homologous with beta-carotene monooxygenases;[7] the homologous ninaB enzyme in Drosophila has both retinal-forming carotenoid-oxygenase activity and all-trans to 11-cis isomerase activity.[32]

Microbial rhodopsins

All-trans-retinal is also an essential component of microbial opsins such as bacteriorhodopsin, channelrhodopsin, and halorhodopsin, which are important in bacterial and archaeal anoxygenic photosynthesis. In these molecules, light causes the all-trans-retinal to become 13-cis retinal, which then cycles back to all-trans-retinal in the dark state. These proteins are not evolutionarily related to animal opsins and are not GPCRs; the fact that they both use retinal is a result of convergent evolution.[33]

History

The American biochemist George Wald and others had outlined the visual cycle by 1958. For his work, Wald won a share of the 1967 Nobel Prize in Physiology or Medicine with Haldan Keffer Hartline and Ragnar Granit.[34]

See also

References

  1. ↑ 1.0 1.1 Merck Index, 13th Edition, 8249
  2. ↑ DasSarma, Shiladitya; Schwieterman, Edward W. (2018). "Early evolution of purple retinal pigments on Earth and implications for exoplanet biosignatures" (in en). International Journal of Astrobiology 20 (3): 241–250. 2018-10-11. doi:10.1017/S1473550418000423. ISSN 1473-5504. 
  3. ↑ Wald, George (14 July 1934). "Carotenoids and the Vitamin A Cycle in Vision". Nature 134 (3376): 65. doi:10.1038/134065a0. Bibcode: 1934Natur.134...65W. 
  4. ↑ Wald, G (11 October 1968). "Molecular basis of visual excitation.". Science 162 (3850): 230–9. doi:10.1126/science.162.3850.230. PMID 4877437. Bibcode: 1968Sci...162..230W. 
  5. ↑ MORTON, R. A.; GOODWIN, T. W. (1 April 1944). "Preparation of Retinene in Vitro". Nature 153 (3883): 405–406. doi:10.1038/153405a0. Bibcode: 1944Natur.153..405M. 
  6. ↑ BALL, S; GOODWIN, TW; MORTON, RA (1946). "Retinene1-vitamin A aldehyde.". The Biochemical Journal 40 (5–6): lix. PMID 20341217. 
  7. ↑ 7.0 7.1 von Lintig, Johannes; Vogt, Klaus (2000). "Filling the Gap in Vitamin A Research: Molecular Identification of An Enzyme Cleaving Beta-carotene to Retinal". Journal of Biological Chemistry 275 (16): 11915–11920. doi:10.1074/jbc.275.16.11915. PMID 10766819. 
  8. ↑ Woggon, Wolf-D. (2002). "Oxidative cleavage of carotenoids catalyzed by enzyme models and beta-carotene 15,15'-monooxygenase". Pure and Applied Chemistry 74 (8): 1397–1408. doi:10.1351/pac200274081397. 
  9. ↑ Kim, Yeong-Su; Kim, Nam-Hee; Yeom, Soo-Jin; Kim, Seon-Won; Oh, Deok-Kun (2009). "In Vitro Characterization of a Recombinant Blh Protein from an Uncultured Marine Bacterium as a β-Carotene 15,15′-Dioxygenase". Journal of Biological Chemistry 284 (23): 15781–93. doi:10.1074/jbc.M109.002618. PMID 19366683. 
  10. ↑ Lidén, M; Eriksson, U (2006). "Understanding Retinol Metabolism: Structure and Function of Retinol Dehydrogenases". Journal of Biological Chemistry 281 (19): 13001–04. doi:10.1074/jbc.R500027200. PMID 16428379. 
  11. ↑ 11.0 11.1 Duester, G (September 2008). "Retinoic Acid Synthesis and Signaling during Early Organogenesis". Cell 134 (6): 921–31. doi:10.1016/j.cell.2008.09.002. PMID 18805086. 
  12. ↑ Lin, Min; Zhang, Min; Abraham, Michael; Smith, Susan M.; Napoli, Joseph L. (2003). "Mouse Retinal Dehydrogenase 4 (RALDH4), Molecular Cloning, Cellular Expression, and Activity in 9-cis-Retinoic Acid Biosynthesis in Intact Cells". Journal of Biological Chemistry 278 (11): 9856–9861. doi:10.1074/jbc.M211417200. PMID 12519776. 
  13. ↑ "KEGG ENZYME: 1.2.3.11 retinal oxidase". https://www.genome.jp/dbget-bin/www_bget?enzyme+1.2.3.11. 
  14. ↑ Casey, P J; Gilman, A G (February 1988). "G protein involvement in receptor-effector coupling.". Journal of Biological Chemistry 263 (6): 2577–2580. doi:10.1016/s0021-9258(18)69103-3. PMID 2830256. 
  15. ↑ Attwood, T. K.; Findlay, J. B. C. (1994). "Fingerprinting G-protein-coupled receptors". Protein Engineering, Design and Selection 7 (2): 195–203. doi:10.1093/protein/7.2.195. PMID 8170923. 
  16. ↑ Bownds, Deric (December 1967). "Site of Attachment of Retinal in Rhodopsin". Nature 216 (5121): 1178–1181. doi:10.1038/2161178a0. PMID 4294735. Bibcode: 1967Natur.216.1178B. 
  17. ↑ Hargrave, P. A.; McDowell, J. H.; Curtis, Donna R.; Wang, Janet K.; Juszczak, Elizabeth; Fong, Shao-Ling; Mohana Rao, J. K.; Argos, P. (1983). "The structure of bovine rhodopsin". Biophysics of Structure and Mechanism 9 (4): 235–244. doi:10.1007/BF00535659. PMID 6342691. 
  18. ↑ 18.0 18.1 18.2 "Crystal structure of rhodopsin: A G protein-coupled receptor". Science 289 (5480): 739–45. August 2000. doi:10.1126/science.289.5480.739. PMID 10926528. Bibcode: 2000Sci...289..739P. 
  19. ↑ "Crystal structure of squid rhodopsin". Nature 453 (7193): 363–7. May 2008. doi:10.1038/nature06925. PMID 18480818. Bibcode: 2008Natur.453..363M. 
  20. ↑ Collins, F. D. (March 1953). "Rhodopsin and Indicator Yellow". Nature 171 (4350): 469–471. doi:10.1038/171469a0. PMID 13046517. Bibcode: 1953Natur.171..469C. 
  21. ↑ Pitt, G. A. J.; Collins, F. D.; Morton, R. A.; Stok, Pauline (1 January 1955). "Studies on rhodopsin. 8. Retinylidenemethylamine, an indicator yellow analogue". Biochemical Journal 59 (1): 122–128. doi:10.1042/bj0590122. PMID 14351151. 
  22. ↑ Lamb, T D (1996). "Gain and kinetics of activation in the G-protein cascade of phototransduction". Proceedings of the National Academy of Sciences 93 (2): 566–570. doi:10.1073/pnas.93.2.566. PMID 8570596. Bibcode: 1996PNAS...93..566L. 
  23. ↑ 23.0 23.1 Ovchinnikov, Yu.A. (8 November 1982). "Rhodopsin and bacteriorhodopsin: structure-function relationships". FEBS Letters 148 (2): 179–191. doi:10.1016/0014-5793(82)80805-3. PMID 6759163. 
  24. ↑ 24.0 24.1 "The Gluopsins: Opsins without the Retinal Binding Lysine". Cells 11 (15): 2441. August 2022. doi:10.3390/cells11152441. PMID 35954284. 
  25. ↑ Katana, Radoslaw; Guan, Chonglin; Zanini, Damiano; Larsen, Matthew E.; Giraldo, Diego; Geurten, Bart R.H.; Schmidt, Christoph F.; Britt, Steven G. et al. (September 2019). "Chromophore-Independent Roles of Opsin Apoproteins in Drosophila Mechanoreceptors". Current Biology 29 (17): 2961–2969.e4. doi:10.1016/j.cub.2019.07.036. PMID 31447373. 
  26. ↑ 26.0 26.1 Leung, Nicole Y.; Thakur, Dhananjay P.; Gurav, Adishthi S.; Kim, Sang Hoon; Di Pizio, Antonella; Niv, Masha Y.; Montell, Craig (April 2020). "Functions of Opsins in Drosophila Taste". Current Biology 30 (8): 1367–1379.e6. doi:10.1016/j.cub.2020.01.068. PMID 32243853. 
  27. ↑ "Melanopsin triggers the release of internal calcium stores in response to light". Photochemistry and Photobiology 83 (2): 273–279. March 2007. doi:10.1562/2006-07-11-RA-964. PMID 16961436. 
  28. ↑ Seki, Takaharu; Isono, Kunio; Ito, Masayoshi; Katsuta, Yuko (1994). "Flies in the Group Cyclorrhapha Use (3S)-3-Hydroxyretinal as a Unique Visual Pigment Chromophore". European Journal of Biochemistry 226 (2): 691–696. doi:10.1111/j.1432-1033.1994.tb20097.x. PMID 8001586. 
  29. ↑ Seki, Takaharu; Isono, Kunio; Ozaki, Kaoru; Tsukahara, Yasuo; Shibata-Katsuta, Yuko; Ito, Masayoshi; Irie, Toshiaki; Katagiri, Masanao (1998). "The metabolic pathway of visual pigment chromophore formation in Drosophila melanogaster: All-trans (3S)-3-hydroxyretinal is formed from all-trans retinal via (3R)-3-hydroxyretinal in the dark". European Journal of Biochemistry 257 (2): 522–527. doi:10.1046/j.1432-1327.1998.2570522.x. PMID 9826202. 
  30. ↑ Moiseyev, Gennadiy; Chen, Ying; Takahashi, Yusuke; Wu, Bill X.; Ma, Jian-xing (2005). "RPE65 is the isomerohydrolase in the retinoid visual cycle". Proceedings of the National Academy of Sciences 102 (35): 12413–12418. doi:10.1073/pnas.0503460102. PMID 16116091. Bibcode: 2005PNAS..10212413M. 
  31. ↑ Jin, Minghao; Yuan, Quan; Li, Songhua; Travis, Gabriel H. (2007). "Role of LRAT on the Retinoid Isomerase Activity and Membrane Association of Rpe65". Journal of Biological Chemistry 282 (29): 20915–20924. doi:10.1074/jbc.M701432200. PMID 17504753. 
  32. ↑ Oberhauser, Vitus; Voolstra, Olaf; Bangert, Annette; von Lintig, Johannes; Vogt, Klaus (2008). "NinaB combines carotenoid oxygenase and retinoid isomerase activity in a single polypeptide". Proceedings of the National Academy of Sciences 105 (48): 19000–5. doi:10.1073/pnas.0807805105. PMID 19020100. Bibcode: 2008PNAS..10519000O. 
  33. ↑ Chen, De-Liang; Wang, Guang-yu; Xu, Bing; Hu, Kun-Sheng (2002). "All-trans to 13-cis retinal isomerization in light-adapted bacteriorhodopsin at acidic pH". Journal of Photochemistry and Photobiology B: Biology 66 (3): 188–194. doi:10.1016/S1011-1344(02)00245-2. PMID 11960728. 
  34. ↑ Nobel Prize in Physiology or Medicine 1967

Further reading

External links

he:אופסין#רטינל



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