Biology:Thermofilum

From HandWiki

Thermofilum is a genus of archaea in the family Thermofilaceae.[1]

Thermofilum pendens is a hyperthermic member of the archael kingdom Crenarchaeota,[2] and represents a deep branch in the order Thermoproteales. T. pendens lacks the genes for purine nucleotide biosynthesis and thus relies on environmental sources to meet its purine requirements.[3][2]

Taxonomy

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[4] and National Center for Biotechnology Information (NCBI).[1]

16S rRNA based LTP_10_2024[5][6][7] 53 marker proteins based GTDB 09-RS220[8][9][10]
Thermofilum
 

T. uzonense Toshchakov et al. 2016

 
 
 

T. adornatum

 
 

T. pendens

 
 
 
 
Infirmifilum
 

I. lucidum Zayulina et al. 2024

 
 

I. uzonense (Toshchakov et al. 2016) Zayulina et al. 2024

 
 
Thermofilum
 

T. adornatum Zayulina et al. 2020

 
 

T. pendens Zillig & Gierl 1983

 
 
 

References

  1. ↑ 1.0 1.1 C.L. Schoch. "Thermofilum". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2268&lvl=3&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock. 
  2. ↑ 2.0 2.1 "Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction". J Bacteriol 190 (8): 2957–65. April 2008. doi:10.1128/JB.01949-07. PMID 18263724. 
  3. ↑ "Purine biosynthesis in archaea: variations on a theme". Biol Direct 6: 63. December 2011. doi:10.1186/1745-6150-6-63. PMID 22168471. 
  4. ↑ A.C. Parte. "Thermofilum". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/Thermofilum. 
  5. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  6. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree. 
  7. ↑ "LTP_10_2024 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf. 
  8. ↑ "GTDB release 09-RS220". https://gtdb.ecogenomic.org/about#4%7C. 
  9. ↑ "ar53_r220.sp_label". https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/ar53_r220.sp_labels.tree. 
  10. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 

Further reading

Scientific journals

  • Burggraf S; Huber H; Stetter KO (1997). "Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data". Int. J. Syst. Bacteriol. 47 (3): 657–660. doi:10.1099/00207713-47-3-657. PMID 9226896. 
  • Zillig W; Gierl A; Schreiber G; Wunderl S; Janekovic D; Stetter KO et al. (1983). "The archaebacterium Thermofilum pendens represents a novel genus of the thermophilic, anaerobic sulfur respiring Thermoproteales". Syst. Appl. Microbiol. 4 (1): 79–87. doi:10.1016/S0723-2020(83)80035-6. PMID 23196301. Bibcode: 1983SyApM...4...79Z. 
  • Li, Dan (May 2013). "Characterization and application of an acidophilic and thermostable beta-glucosidase from Thermofilum pendens". Journal of Bioscience and Bioengineering 115 (5): 490–6. doi:10.1016/j.jbiosc.2012.11.009. PMID 23266119. 

Wikidata ☰ Q11951770 entry



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