Biology:Treponema

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Short description: Genus of bacteria

Treponema
"Treponema pallidum" spirochaetes
Treponema pallidum spirochaetes
Scientific classification e
Domain: Bacteria
Phylum: Spirochaetota
Class: Spirochaetia
Order: Spirochaetales
Family: Treponemataceae
Genus: Treponema
Schaudinn 1905 emend. Abt, Göker & Klenk 2013
Type species
Treponema pallidum
(Schaudinn & Hoffmann 1905) Schaudinn 1905
Species[1]

See text

Synonyms
  • "Spironema" Vuillemin 1905 non Klebs 1892 non Leger & Hesse 1922 non Rafinesque 1838 non Hochst. 1842 non Lindley 1840 non Meek 1864
  • "Microspironema" Stiles & Pfender 1905

Treponema is a genus of spiral-shaped bacteria. The major treponeme species of human pathogens is Treponema pallidum, whose subspecies are responsible for diseases such as syphilis, bejel, and yaws. Treponema carateum is the cause of pinta.[2] Treponema paraluiscuniculi is associated with syphilis in rabbits.[3] Treponema succinifaciens has been found in the gut microbiome of traditional rural human populations.[4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[5] and National Center for Biotechnology Information (NCBI).[1]

16S rRNA based LTP_08_2023[6][7][8] 120 marker proteins based GTDB 08-RS214[9][10][11]
Treponemataceae

Gracilinema caldarium (Pohlschröder, Leschine & Canale-Parola 1995) Brune et al. 2022

Zuelzera stenostrepta (Zuelzer 1912) Brune et al. 2022

Breznakiella homolactica Song et al. 2022

Helmutkoenigia isoptericolens (Dröge et al. 2008) Brune et al. 2022

Leadbettera azotonutricia (Graber et al. 2004) Brune et al. 2022

Treponema primitia Graber, Leadbetter & Breznak 2004

Brucepastera parasyntrophica Song et al. 2023

Teretinema zuelzerae (Canale-Parola 1980) Song et al. 2023

Treponema

T. medium Umemoto et al. 1997

T. phagedenis (Noguchi 1912) Brumpt 1922 ex Kuhnert et al. 2020

T. denticola (Flügge 1886) Brumpt 1925 ex Chan et al. 1993

T. pedis Evans et al. 2009

T. putidum Wyss et al. 2004

s.s.
Treponema

T. brennaborense Schrank et al. 1999

T. lecithinolyticum Wyss et al. 1999

T. maltophilum Wyss et al. 1996

T. pectinovorum Smibert & Burmeister 1983

T. bryantii Stanton & Canale-Parola 1980

T. rectale Staton et al. 2017

T. berlinense Nordhoff et al. 2005

T. porcinum Nordhoff et al. 2005

T. peruense Belkhou et al. 2021

T. succinifaciens Cwyk and Canale-Parola 1981

T. ruminis Newbrook et al. 2017

T. saccharophilum Paster & Canale-Parola 1986

T. amylovorum Wyss et al. 1997

T. parvum Wyss et al. 2001 non Dobell 1912

T. socranskii

T. s. paredis Smibert, Johnson & Ranney 1984

T. s. buccale Smibert, Johnson & Ranney 1984

T. s. socranskii Smibert, Johnson & Ranney 1984

species‑group 2
Breznakiellaceae

Gracilinema caldarium

Breznakiella homolactica

Leadbettera azotonutricia

Treponema primitia

Treponemataceae

"Ca. Gallitreponema excrementavium" Gilroy et al. 2021

"Ca. Avitreponema avistercoris" Gilroy et al. 2021

Brucepastera parasyntrophica

Treponema

T. pedis

T. denticola

T. putidum

T. medium

"T. vincentii" (Blanchard 1906) Brumpt 1922 ex Smibert 1984

T. pallidum (Schaudinn & Hoffmann 1905) Schaudinn 1905 [incl. Treponema paraluiscuniculi (Jacobsthal 1920) Smibert 1974]

T. phagedenis

s.s.
Treponema

Treponema brennaborense

"Ca. Treponema excrementipullorum" Gilroy et al. 2021

Treponema lecithinolyticum

Treponema maltophilum

Treponema bryantii

Treponema porcinum

Treponema parvum

Treponema socranskii

Treponema peruense

Treponema rectale

T. succinifaciens

Treponema berlinense

Treponema pectinovorum

Treponema ruminis

Treponema saccharophilum

"Treponema zioleckii" Piknova et al. 2008

species‑group 2
s.s.

Unassigned species:

  • "Ca. Treponema caballi" Gilroy et al. 2022
  • Treponema calligyrum Noguchi 1913
  • Treponema carateum Brumpt 1939 (pinta-causing Treponema)
  • "Ca. T. equi" Gilroy et al. 2022 non (Novy & Napp 1906) Noguchi 1928
  • "Ca. T. equifaecale" Gilroy et al. 2022
  • "Ca. Treponema faecavium" Gilroy et al. 2021
  • "Ca. T. intracellulare" Ohkuma et al. 2015 corrig. Oren et al. 2020
  • "T. legeri" (Duboscq & Lebailly 1912) Zuelzer 1925
  • "T. macrodentium" Noguchi 1912
  • "Ca. T. merdequi" Gilroy et al. 2022
  • Treponema paraluisleporis Lumeij et al. 1994
  • Treponema pertenue (Castellani 1905) Castellani & Chalmers 1910
  • Treponema refringens (Schaudinn and Hofmann 1905) Castellani and Chalmers
  • "Ca. T. scatequi" Gilroy et al. 2022
  • "Treponema scoliodonta" (Hoffmann 1920) Noguchi 1928 ex Smibert 1984
  • "Ca. Treponema suis" Molbak et al. 2006 non Kujumgiev & Spassova 1967
  • "Ca. Treponema teratonymphae" Noda et al. 2018
  • "T. trimerodonta" (Hoffmann 1920) Prévot 1940

The species Treponema hyodysenteriae and Treponema innocens have been reclassified into Serpulina hyodysenteriae and Serpulina innocens.[12]

See also

References

  1. 1.0 1.1 Sayers. "Treponema". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=157&lvl=3&lin. 
  2. "The endemic treponematoses". Microbes Infect. 4 (1): 83–94. January 2002. doi:10.1016/S1286-4579(01)01513-1. PMID 11825779. 
  3. "The sequence of the acidic repeat protein (arp) gene differentiates venereal from nonvenereal Treponema pallidum subspecies, and the gene has evolved under strong positive selection in the subspecies that causes syphilis". FEMS Immunol. Med. Microbiol. 53 (3): 322–32. August 2008. doi:10.1111/j.1574-695X.2008.00427.x. PMID 18554302. 
  4. "Treponema species enrich the gut microbiota of traditional rural populations but are absent from urban individuals". New Microbes and New Infections 27: 14–21. January 2019. doi:10.1016/j.nmni.2018.10.009. PMID 30555706. 
  5. J.P. Euzéby. "Treponema". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/treponema. 
  6. "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  7. "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree. 
  8. "LTP_08_2023 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf. 
  9. "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C. 
  10. "bac120_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree. 
  11. "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 
  12. "Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula gen. nov., as Serpula hyodysenteriae comb. nov. and Serpula innocens comb. nov". Int. J. Syst. Bacteriol. 41 (1): 50–8. January 1991. doi:10.1099/00207713-41-1-50. PMID 1704792. http://ijs.sgmjournals.org/cgi/pmidlookup?view=long&pmid=1704792. 

Wikidata ☰ Q134745 entry