Biology:Andes virus

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Short description: South American orthohantavirus species


Andes virus
Virus classification e
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Negarnaviricota
Class: Ellioviricetes
Order: Bunyavirales
Family: Hantaviridae
Genus: Orthohantavirus
Species:
Orthohantavirus andesense
Virus:
Andes virus
Synonyms[1][2]
  • Andes hantavirus
  • Andes orthohantavirus

Andes virus (ANDV) is the most common cause of hantavirus pulmonary syndrome (HPS) in South America. It is transmitted mainly by the long-tailed pygmy rice rat. In its natural reservoir, ANDV causes a persistent asymptomatic or mild infection and is spread mainly through saliva. Humans usually become infected by inhaling aerosols of rodent saliva, urine, or feces. In humans, infection can lead to HPS, an illness characterized by an early phase of mild and moderate symptoms such as fever, headache, and fatigue, followed by sudden respiratory failure. The case fatality rate from infection is about 21–36%. Human-to-human transmission of ANDV is sometimes reported, but there is not a strong consensus on whether it can spread between people. Proposed ways of transmission between people involve close contact with an infected person.

The genome of ANDV is about 12.1 kilobases (kb) in length and segmented into three negative-sense, single-stranded RNA (–ssRNA) strands. The small segment encodes the viral nucleoprotein, the medium segment encodes two glycoproteins (Gn and Gc) that form the viral spike protein, which attaches to cell receptors for entry into cells, and the long segment encodes the viral RNA-dependent RNA polymerase (RdRp), which replicates and transcribes the genome. Genome segments are encased in nucleoproteins to form ribonucleoprotein (RNP) complexes that are surrounded by a viral envelope with spikes emanating from its surface.

ANDV replicates first by binding to receptors on the surface of cells. Virus particles, called virions, are then taken into the cell into endosomes, where a drop in pH causes the viral envelope to fuse with the endosome, which releases viral RNPs into the host cell. RdRp then transcribes mRNA, which is translated by ribosomes to make viral proteins, and produces copies of the genome for progeny viruses. New virions are assembled near the cell membrane, where virions bud from the cell membrane and use it to obtain their viral envelope and leave the cell. The virus's main way of evolution is by mutation, but recombination and reassortment of genome segments are possible.

Increased blooming and seeding of bamboos is implicated in elevated long-tailed pygmy rice rat populations and heightened ANDV frequency in rodents and humans. Apart from the long-tailed pygmy rice rat, Andes virus has also been found in various other Sigmodontinae rodent species in South America, most commonly the long-haired grass mouse. The virus was first identified in 1995 in Argentina and is named after the Andes mountains. Sporadic outbreaks have occurred since its discovery, including in Argentina in 1996, in Chile in 1997–1998, in Argentina in 2018–2019, and aboard the MV Hondius in 2026.

Genome

The genome of Andes virus (ANDV) is about 12.1 thousand nucleotides in length and segmented into three negative-sense, single-stranded RNA (–ssRNA) segments. The segments form into circles via non-covalent bonding of the ends of the genome.[3][4] The small segment, about 1.87 kilobases (kb) in length, encodes the viral nucleoprotein and a non-structural protein that inhibits interferon production. The medium segment, about 3.67 kb in length, encodes a glycoprotein precursor that is co-translationally cleaved into two spike proteins (Gn and Gc). The large segment, about 6.56 kb in length, encodes an RNA-dependent RNA polymerase (RdRp), which is responsible for transcribing and replicating the genome.[4][5][6][7] The ends of each segment contain untranslated terminal regions that are involved in the replication and transcription of the genome.[5] These ends are non-covalently connected to each other by basepairing of complementary terminal nucleotides, forming closed circular molecules.[7]

Structure

A not-to-scale 2D diagram of a circular Andes virus virion
Diagram of Andes virus virions

Extracellular virus bodies, called virions, are asymmetric and pleomorphic in shape and range from 120 to 154 nanometers (nm) in diameter. They contain a lipid envelope covered in spike proteins made of the two viral glycoproteins, Gn and Gc. The spike proteins extend about 12 nm out from the surface and are tetrameric, consisting of four copies each of Gn and Gc with helical symmetry,[7] in which Gc forms the head of the spike and mediates membrane fusion and Gn forms the stalk of the spike.[8][9] Spikes are arranged on the surface in a lattice pattern. Inside the envelope are the three genome segments, which are encased in nucleoproteins to form three ribonucleoprotein (RNP) complexes. A copy of RdRp is attached to each RNP complex[3][9] at the complementary ends of each segment.[10]

Life cycle

Andes virus primarily infects vascular endothelial cells and macrophages.[4][5] After reaching the lungs, ANDV either enters epithelial cells or infects patrolling immune cells such as macrophages to reach endothelial cells.[7] It enters these cells by binding to β3-integrins and protocadherin-1 receptors[10][11] with its glycoproteins.[4][note 1] Virions are then taken into a cell in endosomes. Once pH is lowered, the viral envelope fuses with the endosome, which releases viral RNPs into the host cell's cytoplasm for replication and transcription.[3][9]

Once the genome has been transcribed, RdRp and N proteins[10] snatch caps from host messenger RNA (mRNA) to create viral mRNA that is primed for translation by host ribosomes to produce viral proteins.[3][8][9] Free ribosomes translate mRNA to produce RdRp and N proteins, while ribosomes bound to the endoplasmic reticulum synthesize the glycoprotein precursor GnGc,[7] which is co-translationally cleaved to produce the individual Gn and Gc proteins.[4] After cleavage, Gn and Gc form into complete spikes.[8]

For replication of the genome, RdRp produces a complementary positive-sense strand, the makes copies of the genome from this complementary strand.[5][7][10] Progeny RNA strands are encapsidated by nucleoproteins in a helical manner to form RNPs.[5][8] Spike proteins are expressed on the surface of the cell membrane. Viral RNPs are transmitted to the cell membrane where they bud from the surface, thereby obtaining their envelope as new progeny virions leave the cell.[12][note 2]

Evolution

The most common way that hantaviruses evolve is through mutations of individual nucleotides being inserted, deleted, or substituted. Because Andes virus has a segmented genome, it is possible for recombination and reassortment of segments to occur, whereby segments from different lineages mix in a single host cell and produce hybrid progeny.[5]

Ecology

A photograph of a long-tailed pygmy rice rat facing right (its right side visible) while on the ground
The long-tailed pygmy rice rat, the primary reservoir of Andes virus

Andes virus is carried mainly by the long-tailed pygmy rice rat (Oligoryzomys longicaudatus),[5][9][13] a common species in rural Argentina and Chile,[14] where it is found mainly in temperate forests, shrublands, and near rivers.[15] Transmission of Andes virus between rodents appears to be primarily through saliva and aerosols of saliva.[16] In its rodent hosts, it causes a persistent asymptomatic or mild infection.[15][16] O. longicaudatus populations increase following blooming and seeding of bamboo species, which leads to increased Andes virus frequency in rodents and humans.[4][15][17] Apart from the long-tailed pygmy rice rat, Andes virus can be transmitted by other Sigmodontinae rodents[13][18] and is relatively common in the long-haired grass mouse (Abrothrix longipilis).[19] Other species that ANDV has been found in at lower frequencies include:[13]

Disease

Main article: Medicine:Andes virus infection
A map of Argentina colored to indicate risk of exposure to Andes virus in different areas, blue indicating lowest risk and red indicating highest risk
Risk map of HPS caused by Andes virus in Argentina

Andes virus infection can lead to hantavirus pulmonary syndrome (HPS), also called hantavirus cardiopulmonary syndrome (HCPS). Symptoms appear 7–49 days after exposure to the virus[17] and come in three phases: prodromal, cardiopulmonary, and recovery.[5] Prodromal (early) symptoms last for 2–7 days[17] and include fatigue, fever, muscle pain, headache, coughing, nausea, vomiting, diarrhea, abdominal pain, chills, and dizziness.[17][20] Some people only experience prodromal symptoms without more severe disease progression.[17] The cardiopulmonary phase lasts for 2–4 days[17] and is characterized by fluid buildup in the lungs, low oxygen levels in the blood, elevated or irregular heart rate, low blood pressure, cardiogenic shock, and respiratory failure.[5][9][17] The case fatality rate (CFR) from ANDV infection is about 21–36%.[17]

ANDV is the most common cause of HPS in South America, causing infections in Argentina and Chile.[9] The virus is contracted mainly through the inhalation of aerosols of rodent saliva, urine, or feces.[17] Transmission can also occur through consumption of contaminated food, through bites and scratches,[5] and by touching an object with the virus on it, then touching one's mouth, nose, or eyes.[20] ANDV infection is diagnosed based on observation of symptoms and testing for hantavirus nucleic acid, proteins, or hantavirus-specific antibodies. Treatment is supportive in nature and includes supplementing oxygen during the cardiopulmonary phase. No vaccines exist for Andes virus infection, so the main way to prevent infection is to avoid or minimize contact with rodents.[5][9][17] Repeated infections of hantaviruses have not been observed, so recovering from infection likely grants life-long immunity.[21][22]

Human-to-human transmission

There is not widespread consensus on whether Andes virus can spread between people.[23][24] Human-to-human transmission was first reported in 1996, and there have been periodic reports since then of spread from person to person.[25][26] A systematic review of research, however, did not find sufficient evidence of human-to-human transmission.[25] In response to an outbreak in 2026 aboard the MV Hondius, a group of hantavirus experts released a statement saying that ANDV can spread between close contacts but that it is not highly transmissible. According to the group, the time when a person can spread the virus to others is unclear but most likely to occur when one is symptomatic.[26]

Potential routes of transmission include saliva, airborne droplets from coughing or sneezing, from mother to child across the placenta or through breast milk, sexual contact,[15][17] and through the digestive tract.[5] Risk factors include sleeping in the same room as an infected person mainly right before or during the febrile prodromal phase of the disease,[17] intimate contact, caregiving without appropriate protective equipment, and prolonged exposure to an infected person in a poorly ventilated or crowded setting.[26] Individuals with high viral load and liver damage may spread the virus more easily.[27] For human-to-human transmission, symptoms appear an estimated 9–40 days after exposure to the virus.[17] According to the Centers for Disease Control and Prevention, ways to prevent infection include frequent hand washing and avoiding both direct and indirect physical contact with infected people.[20]

Classification

Andes virus is classified in the species Orthohantavirus andesense in the genus Orthohantavirus, which is in the family Hantaviridae, the family that all hantaviruses belong to. The Chile-9717869 isolate of Andes virus is the exemplar virus of the species.[28] This taxonomy is shown hereafter:[2][3][29][30]

The following viruses were previously classified in the same species as Andes virus but were removed due to insufficient information about their genomes prohibiting their classification. They may be isolates of Andes virus.[31]

  • Castelo dos Sonhos virus
  • Lechiguanas virus
  • Orán virus

History

A photograph of the MV Hondius anchored at a dock with two smaller points near it in the foreground
The MV Hondius at anchor in the Port of Granadilla on 10 May 2026. An outbreak of HPS caused by Andes virus occurred on the Hondius in 2026.[32]

Andes virus was first identified in 1995 in the lungs of someone with HPS in El Bolsón, Argentina[33] and is named after the Andes mountain range.[30] Cases were first reported in Chile in October that same year,[14][34] and retrospective analysis identified a potential case in 1993.[35] In 1996, an outbreak of HPS caused by ANDV occurred mainly in the El Bolsón area, during which 18 people were infected and half of them died.[33] This outbreak was the first instance in which human-to-human transmission of ANDV was reported. Since then, sporadic HPS outbreaks caused by ANDV with reported transmission between people have occurred.[36] One such outbreak was in Aysén Region, Chile from July 1997 to January 1998, during which 25 people were infected and 13 died (52%), with possible person-to-person transmission in two clusters of cases.[34]

In 1999, Andes virus was accepted as a species by the International Committee on Taxonomy of Viruses. It has undergone a series of changes to its species name, first changing to Andes hantavirus (2016), then Andes orthohantavirus (2017), and most recently to the current Orthohantavirus andesense (2023).[2] Another major outbreak occurred from November 2018 to February 2019 in Chubut Province, Argentina,[25][37] with 34 cases and 11 deaths (a 32% CFR) and reported transmission between people.[15][17] Recently, in April–May 2026, ANDV was responsible for an outbreak aboard the MV Hondius, resulting in 13 infections and 3 deaths (a 23% CFR) with suggested human-to-human transmission on the ship.[32] On July 28, 2026, Chile declared its first preventive health alert for hantavirus covering 13 regions from Atacama to Magallanes until July 31, 2027 due to higher fatility rates than last year. [38][39]

Notes

  1. ↑ Membrane cholesterol is also necessary for entry.[8]
  2. ↑ New World hantaviruses, including Andes virus, are proposed to assemble their virions at a cell's external plasma membrane by budding from the membrane to obtain their envelope, but evidence has been found of assembly at internal membranes, so where virion assembly occurs is unclear.[8][10]

References

  1. ↑ "Orthohantavirus andesense". National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?command=show&mode=node&id=1980456&lvl=3. 
  2. ↑ 2.0 2.1 2.2 "History of the Taxon: Species: Orthohantavirus andesense (2023 Release, MSL #39)". International Committee on Taxonomy of Viruses. https://ictv.global/taxonomy/taxondetails?taxnode_id=202300022&taxon_name=Orthohantavirus%20andesense. 
  3. ↑ 3.0 3.1 3.2 3.3 3.4 "Genus: Orthohantavirus". International Committee on Taxonomy of Viruses. https://ictv.global/report/chapter/hantaviridae/hantaviridae/mammantavirinae/orthohantavirus. 
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 "Orthohantaviruses: An Overview of the Current Status of Diagnostics and Surveillance". Viruses 17 (5). 26 April 2025. doi:10.3390/v17050622. PMID 40431633. 
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 "Zoonotic Hantaviridae with Global Public Health Significance". Viruses 15 (8): 1705. 8 August 2023. doi:10.3390/v15081705. PMID 37632047. 
  6. ↑ "Hemorrhagic Fever with Renal Syndrome: Literature Review, Epidemiology, Clinical Picture and Pathogenesis". Infect Chemother 54 (1): 1–19. March 2022. doi:10.3947/ic.2021.0148. PMID 35384417. 
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 "Pathogenicity and Virulence of Rodent-Borne Orthohantaviruses". Virulence 16 (1). December 2025. doi:10.1080/21505594.2025.2553784. PMID 40878034. 
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 "Hantavirus Replication Cycle-An Updated Structural Virology Perspective". Viruses 13 (8). 6 August 2021. doi:10.3390/v13081561. PMID 34452426. 
  9. ↑ 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 "Sin Nombre Virus and the Emergence of Other Hantaviruses: A Review of the Biology, Ecology, and Disease of a Zoonotic Pathogen". Biology 12 (11). 9 November 2023. doi:10.3390/biology12111413. PMID 37998012. 
  10. ↑ 10.0 10.1 10.2 10.3 10.4 "Orthohantavirus Replication in the Context of Innate Immunity". Viruses 15 (5). 9 May 2023. doi:10.3390/v15051130. PMID 37243216. 
  11. ↑ "Immunopathogenic Insights Into Members of the Class Bunyaviricetes: A Comparative Review of Emerging Zoonotic Threats". Curr Opin Virol 76. 5 May 2026. doi:10.1016/j.coviro.2026.101544. PMID 42090821. 
  12. ↑ "The Kidney in Hantavirus Infection-Epidemiology, Virology, Pathophysiology, Clinical Presentation, Diagnosis and Management". Clin Kidney J 15 (7): 1231–1252. 29 January 2022. doi:10.1093/ckj/sfac008. PMID 35756741. 
  13. ↑ 13.0 13.1 13.2 "Rodents of Chile: A Brief Appraisal of Their Conservation Status and Ecological Significance". ZooKeys (1254): 107–129. 1 October 2025. doi:10.3897/zookeys.1254.148057. PMID 41079565. Bibcode: 2025ZooK.1254..107H. 
  14. ↑ 14.0 14.1 "Distributional Ecology of Andes Hantavirus: A Macroecological Approach". Int J Health Geogr 17 (1). 22 June 2018. doi:10.1186/s12942-018-0142-z. PMID 29929522. 
  15. ↑ 15.0 15.1 15.2 15.3 15.4 "Human Infection With Andes Hantavirus: An Update for the General Physician". Eur J Intern Med 149. 25 May 2026. doi:10.1016/j.ejim.2026.106946. PMID 42185150. 
  16. ↑ 16.0 16.1 "Transmission Study of Andes Hantavirus Infection in Wild Sigmodontine Rodents". J Virol 78 (21): 11972–11979. November 2004. doi:10.1128/JVI.78.21.11972-11979.2004. PMID 15479837. 
  17. ↑ 17.00 17.01 17.02 17.03 17.04 17.05 17.06 17.07 17.08 17.09 17.10 17.11 17.12 17.13 "Hantavirus in Humans: A Review of Clinical Aspects and Management". Lancet 23 (9): e371–e382. September 2023. doi:10.1016/S1473-3099(23)00128-7. PMID 37105214. 
  18. ↑ "Critical Care Management of Hantavirus Cardiopulmonary Syndrome. A Narrative Review". J Crit Care 84. December 2024. doi:10.1016/j.jcrc.2024.154867. PMID 39024823. https://udecmed.cl/wp-content/uploads/2024/09/hantavirus.pdf. 
  19. ↑ "Ecology, Genetic Diversity, and Phylogeographic Structure of Andes Virus in Humans and Rodents in Chile". J Virol 83 (6): 2446–2459. March 2009. doi:10.1128/JVI.01057-08. PMID 19116256. 
  20. ↑ 20.0 20.1 20.2 "About Andes Virus". Centers for Disease Control and Prevention. 29 May 2026. https://www.cdc.gov/hantavirus/about/andesvirus.html. 
  21. ↑ "Transmission of Haemorrhagic Fever With Renal Syndrome in China and the Role of Climate Factors: A Review". Int J Infect Dis 33: 212–218. April 2015. doi:10.1016/j.ijid.2015.02.010. PMID 25704595. 
  22. ↑ "Human Pathogenic Hantaviruses and Prevention of Infection". Hum Vaccin 7 (6): 685–693. June 2011. doi:10.4161/hv.7.6.15197. PMID 21508676. 
  23. ↑ "Orthohantavirus Rodent Hosts and Genotypes in Southern South America: A Narrative Review". PLOS Negl Trop Dis 19 (9). 9 September 2025. doi:10.1371/journal.pntd.0013489. PMID 40924751. Bibcode: 2025PNTDi..1913489O. 
  24. ↑ "Achievement and Challenges in Orthohantavirus Vaccines". Vaccines 13 (2). 17 February 2025. doi:10.3390/vaccines13020198. PMID 40006744. 
  25. ↑ 25.0 25.1 25.2 "Evidence for Human-to-Human Transmission of Hantavirus: A Systematic Review". J Infect Dis 226 (8): 1362–1371. 17 October 2022. doi:10.1093/infdis/jiab461. PMID 34515290. 
  26. ↑ 26.0 26.1 26.2 "Statement From the International Hantavirus Society and Members of the International Hantavirus Research and Clinical Community Regarding the Current Andes Virus Outbreak Investigation". Zenodo. 12 May 2026. doi:10.5281/zenodo.20134326. https://zenodo.org/records/20134326. 
  27. ↑ "Modeling of Hantavirus Cardiopulmonary Syndrome". Medwave 22 (3). 26 April 2022. doi:10.5867/medwave.2022.03.002526. PMID 35507807. https://www.medwave.cl/medios/medwave/Abril2022/PDF/medwave-2022-03-e002526.pdf. 
  28. ↑ "Species List: Hantaviridae". International Committee on Taxonomy of Viruses. https://ictv.global/report/chapter/hantaviridae/taxonomy/hantaviridae. 
  29. ↑ "A Brief History of Bunyaviral Family Hantaviridae". Diseases 11 (1): 38. 28 February 2023. doi:10.3390/diseases11010038. PMID 36975587. 
  30. ↑ 30.0 30.1 "ICTV Virus Taxonomy Profile: Hantaviridae 2024". J Gen Virol 105 (4). April 2024. doi:10.1099/jgv.0.001975. PMID 38587456. 
  31. ↑ "Reevaluate and Reorganize Family Hantaviridae (Order Bunyavirales)" (zip). International Committee on Taxonomy of Viruses. 23 June 2023. https://ictv.global/ictv/proposals/2023.035M.Hantaviridae_reorg.zip. 
  32. ↑ 32.0 32.1 "Hantavirus Outbreak Linked to Cruise Ship Travel, Multi-Locations". World Health Organization. 28 May 2026. https://www.who.int/emergencies/disease-outbreak-news/item/2026-DON604. 
  33. ↑ 33.0 33.1 "An Unusual Hantavirus Outbreak in Southern Argentina: Person-to-Person Transmission? Hantavirus Pulmonary Syndrome Study Group for Patagonia". Emerg Infect Dis 3 (2): 171–174. April–June 1997. doi:10.3201/eid0302.970210. PMID 9204298. 
  34. ↑ 34.0 34.1 "An Outbreak of Hantavirus Pulmonary Syndrome, Chile, 1997". Emerg Infect Dis 4 (5): 687–694. October–December 1998. doi:10.3201/eid0404.980425. PMID 9866751. 
  35. ↑ "Síndrome pulmonar por Hantavirus: situación de los roedores reservorios y la población humana en la Décima Región, Chile" (in es). Rev Med Chil 131 (2): 169–176. February 2003. doi:10.4067/S0034-98872003000200006. PMID 12708255. 
  36. ↑ "Andes Virus Genome Mutations That Are Likely Associated with Animal Model Attenuation and Human Person-to-Person Transmission". mSphere 8 (3). 22 June 2023. doi:10.1128/msphere.00018-23. PMID 37097182. 
  37. ↑ ""Super-Spreaders" and Person-to-Person Transmission of Andes Virus in Argentina". N Engl J Med 383 (23): 2230–2241. 3 December 2020. doi:10.1056/NEJMoa2009040. PMID 33264545. 
  38. ↑ "Chile decreta por primera vez alerta sanitaria por hantavirus en la mayor parte del país" (in es). 2026-07-29. https://apnews.com/article/chile-alerta-sanitaria-preventiva-hantavirus-7f1d6d8b7b258ed83f2c6626e86630f8. 
  39. ↑ Pereira, Reina (2026-07-28). "Ministerio de Salud declara Alerta Sanitaria por hantavirus desde Atacama a Magallanes" (in es-CL). https://www.minsal.cl/ministerio-de-salud-declara-alerta-sanitaria-por-hantavirus-desde-atacama-a-magallanes/. 

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