Biology:Gordonibacter
Gordonibacter is a genus of Gram-positive, strictly anaerobic, rod-shaped bacteria in the family Eggerthellaceae.[1] Members of the genus have been isolated from the human intestinal tract, and motility varies among species.[2][3][4]
Characteristics
The type strain of Gordonibacter pamelaeae was isolated from the colon of a patient with Crohn's disease. It is non-motile, whereas Gordonibacter urolithinfaciens and Gordonibacter faecis are motile.[2][3][4]
G. urolithinfaciens was originally isolated from human feces and can transform ellagic acid, a dietary polyphenol-derived compound, into urolithin metabolites.[3] G. faecis, which was also isolated from human feces, converts ellagic acid into urolithin C.[4]
Taxonomy
G. pamelaeae is the type species of Gordonibacter.[2] The generic name honours microbiologist Jeffrey I. Gordon and combines his surname with the Neo-Latin word bacter, meaning "rod".[1]
Phylogeny
The following phylogenomic tree is based on the bacterial tree from GTDB release R11-RS232, which was inferred from 120 single-copy marker proteins.[5][6][7] GTDB placeholder species and taxa without validly published names are not shown.
| 120 marker proteins based GTDB R11-RS232 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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References
- ↑ 1.0 1.1 "Genus: Gordonibacter". Leibniz Institute DSMZ. https://lpsn.dsmz.de/genus/gordonibacter.
- ↑ 2.0 2.1 2.2 Würdemann, Dieco; Tindall, Brian J.; Pukall, Rüdiger; Lünsdorf, Heinrich; Strömpl, Christina; Namuth, Thomas; Nahrstedt, Henning; Wos-Oxley, Melissa et al. (2009). "Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov.". International Journal of Systematic and Evolutionary Microbiology 59 (Pt 6): 1405–1415. doi:10.1099/ijs.0.005900-0. PMID 19502325.
- ↑ 3.0 3.1 3.2 Selma, María V.; Tomás-Barberán, Francisco A.; Beltrán, David; García-Villalba, Rocío; Espín, Juan C. (2014). "Gordonibacter urolithinfaciens sp. nov., a urolithin-producing bacterium isolated from the human gut". International Journal of Systematic and Evolutionary Microbiology 64 (Pt 7): 2346–2352. doi:10.1099/ijs.0.055095-0. PMID 24744017.
- ↑ 4.0 4.1 4.2 Kim, Han Sol; Kim, Ji Sun; Suh, Min Kuk; Eom, Mi Kyung; Do, Hyo Eun; Lee, Ju Huck; Park, Seung Hwan; Kang, Se Won et al. (2024). "Gordonibacter faecis sp. nov., producing urolithin C from ellagic acid, isolated from feces of healthy Korean subjects". Archives of Microbiology 206 (3). doi:10.1007/s00203-024-03844-5. PMID 38368591.
- ↑ "About GTDB". https://gtdb.ecogenomic.org/about.
- ↑ "Announcing GTDB R11-RS232". 15 April 2026. https://forum.gtdb.ecogenomic.org/t/announcing-gtdb-r11-rs232/826.
- ↑ "bac120_r232.sp_labels.tree". https://data.gtdb.ecogenomic.org/releases/release232/232.0/auxillary_files/bac120_r232.sp_labels.tree.
Wikidata ☰ Q26211790 entry
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