Biology:Thermus

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Short description: Genus of bacteria


Thermus
Thermus aquaticus.JPG
Thermus aquaticus
Scientific classification e
Domain: Bacteria
Phylum: Deinococcota
Class: Deinococci
Order: Thermales
Family: Thermaceae
Genus: Thermus
Brock & Freeze 1969
Type species
Thermus aquaticus
Brock & Freeze 1969
Species

See text

Thermus is a genus of thermophilic bacteria. It is one of several bacteria belonging to the Deinococcota phylum. Thermus species can be distinguished from other genera in the family Thermaceae as well as all other bacteria by the presence of eight conserved signature indels (CSIs) found in proteins such as adenylate kinase and replicative DNA helicase as well as 14 conserved signature proteins (CSPs) that are exclusively shared by members of this genus.[1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and the National Center for Biotechnology Information (NCBI).[3][4][5]

16S rRNA based LTP_08_2023[6][7][8] 120 marker proteins based GTDB 08-RS214[9][10][11]
Thermus
 

T. oshimai Williams et al. 1996[12]

 
 
 

T. filiformis Hudson et al. 1987[13]

 
 
 

T. thermophilus (ex Oshima and Imahori 1974) Manaia et al. 1995[14]

 
 
 

T. composti Vajna et al. 2012[15]

 
 
 

T. aquaticus Brock and Freeze 1969[16]

 
 
 
 

T. arciformis Zhang et al. 2010[17]

 
 
 

T. islandicus Bjornsdottir et al. 2009[18]

 
 
 

T. hydrothermalis Li et al. 2023

 
 
 

T. brockianus Williams et al. 1995[19]

 
 

T. thalpophilus Li et al. 2023

 
 
 
 
 
 
 

T. sediminis Zhou et al. 2021

 
 
 

T. igniterrae Chung et al. 2000[20]

 
 
 

T. thermamylovorans Ming et al. 2020

 
 
 
 

T. caldilimi Li et al. 2021

 
 

T. tengchongensis Yu et al. 2013[21]

 
 
 
 

T. caliditerrae Ming et al. 2014[22]

 
 
 
 

T. brevis Hu et al. 2022

 
 

T. tenuipuniceus Zhou et al. 2019

 
 
 
 

T. albus Li et al. 2023

 
 
 

T. altitudinis Li et al. 2023

 
 
 

T. caldifontis Khan et al. 2017

 
 
 

T. neutrinimicus Li et al. 2023

 
 
 

T. amyloliquefaciens Yu et al. 2015[23]

 
 
 

T. antranikianii Chung et al. 2000[20]

 
 

T. scotoductus Kristjansson et al. 1994[24]

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Thermus
 

T. filiformis

 
 
 

T. oshimai

 
 
 
 

T. islandicus

 
 
 

T. aquaticus

 
 

T. sediminis

 
 
 
 
 
 
 

T. arciformis

 
 

"T. kawarayensis" Kurosawa, Itoh & Itoh 2005

 
 
 
 

T. composti

 
 
 

"T. parvatiensis" Dwivedi et al. 2015

 
 

T. thermophilus

 
 
 
 
 
 

T. brockianus

 
 
 

T. igniterrae

 
 
 

T. thermamylovorans

 
 
 

T. caliditerrae

 
 
 

T. tengchongensis

 
 
 
 

T. amyloliquefaciens

 
 

T. caldifontis

 
 
 
 

T. caldilimi

 
 
 

T. tenuipuniceus

 
 
 

T. antranikianii

 
 

T. scotoductus

 
 
 
 
 
 
 
 
 
 
 
 
 
 

Species incertae sedis:[25]

  • "T. anatoliensis" Kacagan et al. 2016
  • "T. caldophilus" Taguchi et al. 1983
  • "T. eggertssonii" Peters 2008
  • "T. murrieta" Benner et al. 2006
  • "T. nonproteolyticus" 1992
  • "T. rehai" Lin et al. 2002
  • "T. yunnanensis" Gong et al. 2005

See also

References

  1. ↑ Ho, Jonathan; Adeolu, Mobolaji; Khadka, Bijendra; Gupta, Radhey S. (October 2016). "Identification of distinctive molecular traits that are characteristic of the phylum "Deinococcus–Thermus" and distinguish its main constituent groups". Systematic and Applied Microbiology 39 (7): 453–463. doi:10.1016/j.syapm.2016.07.003. ISSN 0723-2020. http://dx.doi.org/10.1016/j.syapm.2016.07.003. 
  2. ↑ J.P. Euzéby. "Thermus". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/genus/thermus. 
  3. ↑ Sayers. "Deinococcus–Thermus". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=1297&lvl=6&lin. 
  4. ↑ Brock TD; Freeze H (1969). "Thermus aquaticus, a Nonsporulating Extreme Thermophile". J. Bacteriol. 98 (1): 289–97. doi:10.1128/jb.98.1.289-297.1969. PMID 5781580. 
  5. ↑ Chung, A. P.; Rainey, F. A.; Valente, M.; Nobre, M. F.; da Costa, M. S. (2000). "Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland". International Journal of Systematic and Evolutionary Microbiology 50 (1): 209–217. doi:10.1099/00207713-50-1-209. ISSN 1466-5026. PMID 10826806. 
  6. ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP. 
  7. ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree. 
  8. ↑ "LTP_08_2023 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf. 
  9. ↑ "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C. 
  10. ↑ "bac120_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree. 
  11. ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/. 
  12. ↑ WILLIAMS, RALPH A. D.; SMITH, KELVIN E.; WELCH, SIMON G.; MICALLEF, JANICE (1996-01-01). "Thermus oshimai sp. nov., Isolated from Hot Springs in Portugal, Iceland, and the Azores, and Comment on the Concept of a Limited Geographical Distribution of Thermus Species". International Journal of Systematic and Evolutionary Microbiology 46 (2): 403–408. doi:10.1099/00207713-46-2-403. PMID 8934898. 
  13. ↑ Hudson, J. A.; Morgan, H. W.; Daniel, R. M. (1987-01-01). "Thermus filiformis sp. nov., a Filamentous Caldoactive Bacterium". International Journal of Systematic and Evolutionary Microbiology 37 (4): 431–436. doi:10.1099/00207713-37-4-431. 
  14. ↑ Manaia, Célia M.; Hoste, Bart; Carmen Gutierrez, M.; Gillis, Monique; Ventosa, Antonio; Kersters, Karel; Da Costa, Milton S. (1995-02-01). "Halotolerant Thermus Strains from Marine and Terrestrial Hot Springs Belong to Thermus thermophilus (ex Oshima and Imahori, 1974) nom. rev. emend.". Systematic and Applied Microbiology 17 (4): 526–532. doi:10.1016/S0723-2020(11)80072-X. 
  15. ↑ Vajna, B.; Kanizsai, S.; Keki, Z.; Marialigeti, K.; Schumann, P.; Toth, E. M. (2012-07-01). "Thermus composti sp. nov., isolated from oyster mushroom compost". International Journal of Systematic and Evolutionary Microbiology 62 (Pt 7): 1486–1490. doi:10.1099/ijs.0.030866-0. PMID 21856987. 
  16. ↑ Brock, Thomas D.; Freeze, Hudson (1969-04-01). "Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile" (in en). Journal of Bacteriology 98 (1): 289–297. doi:10.1128/jb.98.1.289-297.1969. ISSN 0021-9193. PMID 5781580. 
  17. ↑ Zhang, X. Q.; Ying, Y.; Ye, Y.; Xu, X. W.; Zhu, X. F.; Wu, M. (2010-04-01). "Thermus arciformis sp. nov., a thermophilic species from a geothermal area". International Journal of Systematic and Evolutionary Microbiology 60 (4): 834–839. doi:10.1099/ijs.0.007690-0. PMID 19661520. 
  18. ↑ Bjornsdottir, Snaedis H.; Petursdottir, Solveig K.; Hreggvidsson, Gudmundur O.; Skirnisdottir, Sigurlaug; Hjorleifsdottir, Sigridur; Arnfinnsson, Johann; Kristjansson, Jakob K. (2009-01-01). "Thermus islandicus sp. nov., a mixotrophic sulfur-oxidizing bacterium isolated from the Torfajokull geothermal area". International Journal of Systematic and Evolutionary Microbiology 59 (12): 2962–2966. doi:10.1099/ijs.0.007013-0. PMID 19628590. 
  19. ↑ WILLIAMS, R. A. D.; SMITH, K. E.; WELCH, S. G.; MICALLEF, J.; SHARP, R. J. (1995-07-01). "DNA Relatedness of Thermus Strains, Description of Thermus brockianus sp. nov., and Proposal To Reestablish Thermus thermophilus (Oshima and Imahori)". International Journal of Systematic Bacteriology 45 (3): 495–499. doi:10.1099/00207713-45-3-495. PMID 8590676. 
  20. ↑ 20.0 20.1 Chung, A. P.; Rainey, F. A.; Valente, M.; Nobre, M. F.; Costa, M. S. da (2000-01-01). "Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland". International Journal of Systematic and Evolutionary Microbiology 50 (1): 209–217. doi:10.1099/00207713-50-1-209. PMID 10826806. 
  21. ↑ Yu, Tian-Tian; Yao, Ji-Cheng; Ming, Hong; Yin, Yi-Rui; Zhou, En-Min; Liu, Min-Jiao; Tang, Shu-Kun; Li, Wen-Jun (2013). "Thermus tengchongensis sp. nov., isolated from a geothermally heated soil sample in Tengchong, Yunnan, south-west China". Antonie van Leeuwenhoek 103 (3): 513–518. doi:10.1007/s10482-012-9833-9. PMID 23104072. 
  22. ↑ Ming, H.; Yin, Y.-R.; Li, S.; Nie, G.-X.; Yu, T.-T.; Zhou, E.-M.; Liu, L.; Dong, L. et al. (2014-02-01). "Thermus caliditerrae sp. nov., a novel thermophilic species isolated from a geothermal area". International Journal of Systematic and Evolutionary Microbiology 64 (Pt 2): 650–656. doi:10.1099/ijs.0.056838-0. PMID 24158953. 
  23. ↑ Yu, Tian-Tian; Park, Dong-Jin; Hozzein, Wael N.; Kim, Chang-Jin; Wadaan, Mohammed A. M.; Ming, Hong; Li, Wen-Jun; Yao, Ji-Cheng et al. (2015-08-01). "Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample". International Journal of Systematic and Evolutionary Microbiology 65 (8): 2491–2495. doi:10.1099/ijs.0.000289. PMID 25920724. 
  24. ↑ Kristjánsson, Jakob; Hjörleifsdóttir, Sigrídur; Marteinsson, Viggó; Alfredsson, Gudni (1994). "Thermus scotoductus, sp. nov., a Pigment-Producing Thermophilic Bacterium from Hot Tap Water in Iceland and Including Thermus sp. X-1". Systematic and Applied Microbiology 17 (1): 44–50. doi:10.1016/S0723-2020(11)80030-5. 
  25. ↑ TENREIRO, S.; NOBRE, M. F.; COSTA, M. S. DA (1995-10-01). "Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., Two New Species Related to Thermus ruber but with Lower Growth Temperatures". International Journal of Systematic Bacteriology 45 (4): 633–639. doi:10.1099/00207713-45-4-633. PMID 7547281. 

Wikidata ☰ Q7783265 entry



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