Biology:Haloarculaceae
| Haloarculaceae | |
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| Scientific classification | |
| Domain: | |
| Phylum: | |
| Class: | Halobacteria
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| Order: | |
| Family: | Haloarculaceae Gupta et al. 2016
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| Genera | |
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Haloarculaceae is a family of halophilic and mostly chemoorganotrophic archaea within the order Halobacteriales.[1][2][3] The type genus of this family is Haloarcula.[4] Its biochemical characteristics are the same as the order Halobacteriales.
The name Haloarculaceae is derived from the Latin term Haloarcula, referring to the type genus of the family and the suffix "-ceae," an ending used to denote a family. Together, Haloarculaceae refers to a family whose nomenclatural type is the genus Haloarcula.
Current Taxonomy and Molecular Signatures
As of 2021, Haloarculaceae contains 10 validly published genera.[4] This family can be molecularly distinguished from other Halobacteria by the presence of 19 conserved signature proteins (CSPs) and seven conserved signature indels (CSIs) present in the following proteins: acetylglutamate kinase, ribonuclease R, metallo-beta-lactamase, tRNA modifying enzyme, carbamoyl phosphate synthase large subunit and hypothetical proteins.[1]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[4] and National Center for Biotechnology Information (NCBI).[5]
| 16S rRNA based LTP_06_2022[6][7][8] | 53 marker proteins based GTDB 08-RS214[9][10][11] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Note: * paraphyletic Halobacteriaceae
See also
References
- ↑ 1.0 1.1 Gupta, Radhey S.; Naushad, Sohail; Fabros, Reena; Adeolu, Mobolaji (2016-02-02). "A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov.". Antonie van Leeuwenhoek 109 (4): 565–587. doi:10.1007/s10482-016-0660-2. ISSN 0003-6072. PMID 26837779. http://dx.doi.org/10.1007/s10482-016-0660-2.
- ↑ Grant, William D.; Kamekura, Masahiro; McGenity, Terry J.; Ventosa, Antonio (2015-09-14). "Halobacteria class. nov.". Bergey's Manual of Systematics of Archaea and Bacteria: 1. doi:10.1002/9781118960608.cbm00026. ISBN 9781118960608. http://dx.doi.org/10.1002/9781118960608.cbm00026.
- ↑ Oren, Aharon (2012-02-01). "Taxonomy of the family Halobacteriaceae: a paradigm for changing concepts in prokaryote systematics". International Journal of Systematic and Evolutionary Microbiology 62 (2): 263–271. doi:10.1099/ijs.0.038653-0. ISSN 1466-5026. PMID 22155757.
- ↑ 4.0 4.1 4.2 J.P. Euzéby. "Haloarculaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/family/haloarculaceae. Retrieved 2023-08-15.
- ↑ Sayers. "Haloarculaceae". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=1963268&lvl=3&keep=1&srchmode=1&unlock. Retrieved 2023-08-15.
- ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP.
- ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree.
- ↑ "LTP_06_2022 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf.
- ↑ "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C.
- ↑ "ar53_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree.
- ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/.
Wikidata ☰ Q62594328 entry
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