Chemistry:CDK inhibitor

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Short description: Any chemical that inhibits the function of CDKs


A CDK (cyclin-dependent kinase) inhibitor is any chemical that inhibits the function of CDKs. They are used to treat cancers by preventing overproliferation of cancer cells. The US FDA approved the first drug of this type, palbociclib (Ibrance),[1] a CDK4/6 inhibitor, in February 2015, for use in postmenopausal women with breast cancer that is estrogen receptor positive and HER2 negative. Several compounds are in clinical trials.

CDKs as cancer target

See also Ribociclib re: CDK4

In many human cancers, CDKs are overactive or CDK-inhibiting proteins are not functional.[2][3] Therefore, it is rational to target CDK function to prevent unregulated proliferation of cancer cells.

However, the validity of CDK as a cancer target should be carefully assessed because genetic studies have revealed that knockout of one specific type of CDK often does not affect proliferation of cells or has an effect only in specific tissue types. For example, most adult cells in mice proliferate normally even without both CDK4 and CDK2.[4]

Furthermore, specific CDKs are only active in certain periods of the cell cycle. Therefore, the pharmacokinetics and dosing schedule of the candidate compound must be carefully evaluated to maintain active concentration of the drug throughout the entire cell cycle.[5]

Types

Malumbres et al., categorized CDK inhibitors based on their target specificity:[5]

  • Broad CDK inhibitors: compounds targeting a broad spectrum of CDKs
  • Specific CDK inhibitors: compounds targeting a specific type of CDK
  • Multiple target inhibitors: compounds targeting CDKs as well as additional kinases such as VEGFR or PDGFR

Approved

CDK4/CDK6 inhibitors

Several drugs have been approved by the US FDA for HR-positive, HER2-negative breast cancer.

Palbociclib (PD-033299, trade name Ibrance) gave encouraging results in a phase II clinical trial on patients with HR-positive, HER2-negative advanced breast cancer.[6] The addition of PD-0332991 to letrozole trebled median time to disease progression to 26.1 months compared with 7.5 months for letrozole alone. The FDA granted it Accelerated Approval in Feb 2015.[7]

Ribociclib (LEE011, trade names Kisqali and Kryxana), is US FDA approved in combination with letrozole for treatment of breast cancer in patients with HR-positive, HER2-negative advanced metastatic breast cancer.[8] A phase three clinical trial found that ribociclib administered in combination with letrozole increased the likelihood of progression free survival to 63% in the first 18 months of therapy versus 42% for letrozole alone.[9] Subsequent analysis demonstrated that patients treated with ribociclib and letrozole showed a median progression-free survival of 25.3 months.[8]

Abemaciclib (LY2835219, trade name Verzenio)[10] was approved in September 2017 by the FDA for "adult patients who have hormone receptor (HR)-positive, human epidermal growth factor receptor 2 (HER2)-negative advanced or metastatic breast cancer that has progressed after taking therapy that alters a patient's hormones".[11]

In clinical trials

There are more than 10 CDK inhibitor compounds that have gone through or currently ongoing clinical trials, as of 2009. Most of them are targeting multiple CDKs, but some are targeting specific CDKs. For example, P1446A-05 targets CDK4. Various types of cancers including leukemia, melanoma, solid tumors, and other types are being targeted. In some cases, very specific cancer types, such as 'melanoma positive for cyclin D1 expression' are targeted to maximize the efficacy.[12]

(As of February 2017), trilaciclib (G1T28, CDK4/6 inhibitor, G1 Therapeutics) is in multiple phase II clinical trials.[13] The drug is being tested as a method for reducing the adverse effects of chemotherapy. In August 2019, trilaciclib received breakthrough therapy designation[14] for its ability to minimize chemotherapy-induced bone marrow suppression. (As of August 2020), the drug is under Food and Drug Administration (FDA) priority review for small-cell lung cancer with an application decision date of February 15, 2021.[15] Trilaciclib was approved for medical use in the United States in February 2021.[16]

Other

  • Purvalanol A, Olomoucine II.[17]

Based on molecular docking results, Ligands-3, 5, 14, and 16 were screened among 17 different Pyrrolone-fused benzosuberene compounds as potent and specific inhibitors without any cross-reactivity against different CDK isoforms. Analysis of MD simulations and MM-PBSA studies, revealed the binding energy profiles of all the selected complexes. Selected ligands performed better than the experimental drug candidate (Roscovitine). Ligands-3 and 14 show specificity for CDK7 and Ligands-5 and 16 were specific against CDK9. These ligands are expected to possess lower risk of side effects due to their natural origin. [18]

Interpretation of dynamic simulations and binding free energy studies unveiled that Ligand2 (Out of 17 in-house synthesized pyrrolone-fused benzosuberene (PBS) compounds) has a stable and equivalent free energy to Flavopiridol, SU9516, and CVT-313 inhibitors. Ligand2 scrutinized as a selective inhibitor of CDK2 without off-target binding (CDK1 and CDK9) based on ligand efficiency and binding affinity. [19]

Graphical abstract of CDK2 [19]

See also

References

  1. ↑ "FDA approves Ibrance for postmenopausal women with advanced breast cancer". https://www.fda.gov/NewsEvents/Newsroom/PressAnnouncements/ucm432871.htm. 
  2. ↑ Malumbres, M; Barbacid, M (2001). "To cycle or not to cycle: A critical decision in cancer". Nature Reviews Cancer 1 (3): 222–31. doi:10.1038/35106065. PMID 11902577. 
  3. ↑ Malumbres, M; Barbacid, M (2009). "Cell cycle, CDKs and cancer: A changing paradigm". Nature Reviews Cancer 9 (3): 153–66. doi:10.1038/nrc2602. PMID 19238148. 
  4. ↑ Barrière, C; Santamaría, D; Cerqueira, A; Galán, J; Martín, A; Ortega, S; Malumbres, M; Dubus, P et al. (2007). "Mice thrive without Cdk4 and Cdk2". Molecular Oncology 1 (1): 72–83. doi:10.1016/j.molonc.2007.03.001. PMID 19383288. 
  5. ↑ 5.0 5.1 Malumbres, M; Pevarello, P; Barbacid, M; Bischoff, J. R. (2008). "CDK inhibitors in cancer therapy: What is next?". Trends in Pharmacological Sciences 29 (1): 16–21. doi:10.1016/j.tips.2007.10.012. PMID 18054800. 
  6. ↑ "Novel Agent Extends Breast Cancer Time to Progression". 6 Dec 2012. http://www.medpagetoday.com/MeetingCoverage/SABCS/36306. 
  7. ↑ "FDA Grants Palbociclib Accelerated Approval for Advanced Breast Cancer - National Cancer Institute" (in en). 2015-02-11. https://www.cancer.gov/news-events/cancer-currents-blog/2015/palbociclib-breast-cancer. 
  8. ↑ 8.0 8.1 "Novartis Kisqali® (ribociclib, LEE011) receives FDA approval as first-line treatment for HR+/HER2- metastatic breast cancer in combination with any aromatase inhibitor". Novartis. https://www.novartis.com/news/media-releases/novartis-kisqalir-ribociclib-lee011-receives-fda-approval-first-line-treatment. Retrieved 12 September 2017. 
  9. ↑ Hortobagyi, GN; Stemmer, SM; Burris, HA; Yap, YS; Sonke, GS; Paluch-Shimon, S; Campone, M; Blackwell, KL et al. (3 November 2016). "Ribociclib as First-Line Therapy for HR-Positive, Advanced Breast Cancer.". The New England Journal of Medicine 375 (18): 1738–1748. doi:10.1056/NEJMoa1609709. PMID 27717303. 
  10. ↑ Lu, Janice (13 August 2015). "Palbociclib: a first-in-class CDK4/CDK6 inhibitor for the treatment of hormone-receptor positive advanced breast cancer". Journal of Hematology & Oncology 8 (1): 98. doi:10.1186/s13045-015-0194-5. PMID 26264704. 
  11. ↑ "FDA approves new treatment for certain advanced or metastatic breast cancers" (Press release). U.S. Food and Drug Administration (FDA). September 28, 2017.
  12. ↑ Lapenna, S; Giordano, A (2009). "Cell cycle kinases as therapeutic targets for cancer". Nature Reviews Drug Discovery 8 (7): 547–66. doi:10.1038/nrd2907. PMID 19568282. 
  13. ↑ Trilaciclib trials
  14. ↑ "Breakthrough Therapies". https://friendsofcancerresearch.org/breakthrough-therapies. 
  15. ↑ staff, By. "FDA Grants Priority Review of Trilaciclib for Treating Small Cell Lung Cancer" (in en). https://www.uspharmacist.com/article/fda-grants-priority-review-of-trilaciclib-for-treating-small-cell-lung-cancer. 
  16. ↑ "FDA Approves Drug to Reduce Bone Marrow Suppression Caused by Chemotherapy". U.S. Food and Drug Administration (FDA) (Press release). 12 February 2021. Retrieved 12 February 2021. This article incorporates text from this source, which is in the public domain.
  17. ↑ Purvalanol A, Olomoucine II and Roscovitine Inhibit ABCB1 Transporter and Synergistically Potentiate Cytotoxic Effects of Daunorubicin In Vitro.
  18. ↑ "Natural analogues inhibiting selective cyclin-dependent kinase protein isoforms: a computational perspective". Journal of Biomolecular Structure and Dynamics 38 (17): 5126–5135. November 2019. doi:10.1080/07391102.2019.1696709. PMID 3176087. 
  19. ↑ 19.0 19.1 "Identification of selective cyclin-dependent kinase 2 inhibitor from the library of pyrrolone-fused benzosuberene compounds: an in silico exploration". Journal of Biomolecular Structure and Dynamics 40 (17): 7693–7701. March 2021. doi:10.1080/07391102.2021.1900918. PMID 33749525. https://figshare.com/articles/journal_contribution/14259911. 




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