Biology:Nitrospirota
Nitrospirota | |
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Scientific classification | |
Domain: | Bacteria |
Phylum: | Nitrospirota Garrity & Holt 2021[1] |
Classes & Orders | |
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Synonyms | |
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Nitrospirota is a phylum of bacteria. It includes multiple genera, such as Nitrospira, the largest. The first member of this phylum, Nitrospira marina, was discovered in 1985.[2] The second member, Nitrospira moscoviensis, was discovered in 1995.[3][4]
Nitrospirota contains nitrifying taxa which oxidize nitrite to nitrate (nitrite-oxidizing bacteria, NOB[5]) and commamox bacteria Nitrospira inopinata discovered in 2015[6][7] and cultivated in 2017.[8]
Phylogeny
16S rRNA based LTP_08_2023[9][10][11] | 120 single copy marker proteins based GTDB 08-RS214[12][13][14] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Taxonomy
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN)[15] and the National Center for Biotechnology Information (NCBI).[4]
- Phylum "Nitrospirota" Garrity & Holt 2021
- Genus "Candidatus Magnetocorallium" Zhao et al. 2023
- Species "Ca. M. paracelense" Zhao et al. 2023
- Genus "Candidatus Magnetomicrobium" Zhang et al. 2021
- Species "Ca. M. cryptolimnococcus" Zhang et al. 2021
- Genus "Candidatus Nitrobium" Arshad et al. 2017
- Species "Ca. N. versatile" Arshad et al. 2017
- Genus "Candidatus Thermomagnetovibrio" Lefèvre et al. 2010
- Species "Ca. T. paiutensis" Lefèvre et al. 2010
- Class "Leptospirillia"
- Order "Leptospirillales"
- Family "Leptospirillaceae" Cavalier-Smith 2020
- Genus Leptospirillum Markosyan 1972 ex Hippe 2000
- Species "L. ferrodiazotrophum" Tyson et al. 2005
- Species L. ferriphilum Coram & Rawlings 2002
- Species L. ferrooxidans Markosyan 1972 ex Hippe 2000
- Species "L. rubarum" Aliaga Goltsman et al. 2009
- Species L. thermoferrooxidans Hippe 2000
- Genus Leptospirillum Markosyan 1972 ex Hippe 2000
- Family "Leptospirillaceae" Cavalier-Smith 2020
- Order "Leptospirillales"
- Class Nitrospiria Oren et al. 2015
- Order "Nitrospirales" Garrity & Holt 2001
- Family "Nitrospiraceae" Garrity & Holt 2001
- Genus "Candidatus Nitronereus" Mueller et al. 2023
- Species "Ca. N. thalassa" Mueller et al. 2023
- Genus "Candidatus Porinitrospira" Taylor et al. 2022
- Species "Ca. P. cymbastela" Taylor et al. 2022
- Genus Nitrospira Watson et al. 1986
- Species "Ca. N. alkalitolerans" Daebeler et al. 2020
- Species "Ca. N. bockiana" Lebedeva et al. 2008
- Species N. calida Lebedeva et al. 2011
- Species N. defluvii Nowka et al. 2015
- Species "Ca. N. inopinata" Daims et al. 2015
- Species N. japonica Ushiki et al. 2013
- Species "Ca. N. kreftii" Sakoula et al. 2021
- Species N. lenta Nowka et al. 2015
- Species N. marina Watson et al. 1986 (type sp.)
- Species N. moscoviensis Ehrich et al. 1995
- Species "Ca. N. nitrificans" van Kessel et al. 2015
- Species "Ca. N. nitrosa" van Kessel et al. 2015
- Species "Ca. N. salsa" Haaijer et al. 2013
- Genus "Candidatus Nitronereus" Mueller et al. 2023
- Family "Nitrospiraceae" Garrity & Holt 2001
- Order "Troglogloeales" Yu et al. 2022
- Genus "Candidatus Troglogloea" corrig. Kostanjsek et al. 2013
- Species "Ca. T. absolonii" corrig. Kostanjsek et al. 2013
- Family "Manganitrophaceae" Yu et al. 2022
- Genus "Candidatus Manganitrophus" Yu & Leadbetter 2020
- Species "Ca. M. morganii" Yu et al. 2022
- Species "Ca. M. noduliformans" Yu & Leadbetter 2020
- Genus "Candidatus Manganitrophus" Yu & Leadbetter 2020
- Genus "Candidatus Troglogloea" corrig. Kostanjsek et al. 2013
- Order "Nitrospirales" Garrity & Holt 2001
- Class Thermodesulfovibrionia Umezawa et al. 2021
- Order "Mariimomonadales" Yoon et al. 2023
- Family "Mariimomonadaceae" Yoon et al. 2023
- Genus "Ca. Mariimomonas Yoon et al. 2023
- Species "Ca. M. ferrooxydans" Yoon et al. 2023
- Genus "Ca. Mariimomonas Yoon et al. 2023
- Family "Mariimomonadaceae" Yoon et al. 2023
- Order "Thermodesulfovibrionales" Umezawa et al. 2021
- Family Dissulfurispiraceae Umezawa et al. 2021
- Genus Dissulfurispira Umezawa et al. 2021
- Species D. thermophila Umezawa et al. 2021
- Genus Dissulfurispira Umezawa et al. 2021
- Family Thermodesulfovibrionaceae Umezawa et al. 2021
- Genus "Candidatus Magnetobacterium" Spring et al. 1993
- Species "Ca. M. bavaricum" Spring et al. 1993
- Species "Ca. M. casense" corrig. Lin et al. 2014
- Genus "Candidatus Magnetominusculus" Lin et al. 2017
- Species "Ca. M. xianensis" Lin et al. 2017
- Genus "Candidatus Magnetovum" corrig. Lefevre et al. 2011
- Species "Ca. M. chiemensis" Kolinko 2014
- Species "Ca. M. mohavensis" Lefevre et al. 2011
- Genus "Candidatus Sulfobium" Zecchin et al. 2018
- Species "Ca. S. mesophilum" Zecchin et al. 2018
- Genus Thermodesulfovibrio Henry et al. 1994 emend. Sekiguchi et al. 2008
- Species T. aggregans Sekiguchi et al. 2008
- Species T. hydrogeniphilus Haouari et al. 2009
- Species T. islandicus Sonne-Hansen and Ahring 2000
- Species T. thiophilus Sekiguchi et al. 2008
- Species T. yellowstonii Henry et al. 1994 (type sp.)
- Genus "Candidatus Magnetobacterium" Spring et al. 1993
- Family Dissulfurispiraceae Umezawa et al. 2021
- Order "Mariimomonadales" Yoon et al. 2023
- Genus "Candidatus Magnetocorallium" Zhao et al. 2023
See also
- Comammox
- Nitrate
- Nitrite
- Nitrogen cycle
- Nitrobacter
- Nitrobacteraceae
- Nitrosomonas
- Nitrospira
- List of bacterial orders
- List of bacteria genera
References
- ↑ "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol 71 (10): 5056. 2021. doi:10.1099/ijsem.0.005056. PMID 34694987.
- ↑ "Nitrospira marina gen. nov. sp. nov.: a chemolithotrophic nitrite-oxidizing bacterium.". Arch Microbiol 144 (1): 1–7. 1986. doi:10.1007/BF00454947.
- ↑ "A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship". Archives of Microbiology 164 (1): 16–23. July 1995. doi:10.1007/BF02568729. PMID 7646315.
- ↑ 4.0 4.1 Sayers. "Nitrospirae". National Center for Biotechnology Information (NCBI) taxonomy database. https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=40117&lvl=3&lin=f&keep=1&srchmode=1&unlock.
- ↑ "In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plants". Applied and Environmental Microbiology 67 (11): 5273–84. November 2001. doi:10.1128/AEM.67.11.5273-5284.2001. PMID 11679356. Bibcode: 2001ApEnM..67.5273D.
- ↑ "Complete nitrification by Nitrospira bacteria". Nature 528 (7583): 504–9. December 2015. doi:10.1038/nature16461. PMID 26610024. Bibcode: 2015Natur.528..504D.
- ↑ "Complete nitrification by a single microorganism". Nature 528 (7583): 555–9. December 2015. doi:10.1038/nature16459. PMID 26610025. Bibcode: 2015Natur.528..555V.
- ↑ "Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle". Nature 549 (7671): 269–272. September 2017. doi:10.1038/nature23679. PMID 28847001. Bibcode: 2017Natur.549..269K.
- ↑ "The LTP". https://imedea.uib-csic.es/mmg/ltp/#LTP.
- ↑ "LTP_all tree in newick format". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree.
- ↑ "LTP_08_2023 Release Notes". https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf.
- ↑ "GTDB release 08-RS214". https://gtdb.ecogenomic.org/about#4%7C.
- ↑ "bac120_r214.sp_label". https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree.
- ↑ "Taxon History". https://gtdb.ecogenomic.org/taxon_history/.
- ↑ ""Nitrospirae"". List of Prokaryotic names with Standing in Nomenclature (LPSN). https://lpsn.dsmz.de/phylum/nitrospirae.
Further reading
- "Culture-independent characterization of a novel, uncultivated magnetotactic member of the Nitrospirae phylum". Environmental Microbiology 13 (2): 538–49. February 2011. doi:10.1111/j.1462-2920.2010.02361.x. PMID 20977572. https://digitalcommons.calpoly.edu/cgi/viewcontent.cgi?article=1327&context=phy_fac.
External links
Wikidata ☰ Q20751938 entry
Original source: https://en.wikipedia.org/wiki/Nitrospirota.
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