Chemistry:Thiophene

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Short description: Sulfur-containing aromatic compound
Thiophene
Full displayed formula of thiophene
Skeletal formula showing numbering convention
Ball-and-stick model
Space-filling model
Names
Preferred IUPAC name
Thiophene[1]
Other names
Thiofuran
Thiacyclopentadiene
Thiole
Identifiers
3D model (JSmol)
ChEBI
ChEMBL
ChemSpider
RTECS number
  • XM7350000
UNII
Properties
C4H4S
Molar mass 84.14 g/mol
Appearance colorless liquid
Density 1.051 g/mL, liquid
Melting point −38 °C (−36 °F; 235 K)
Boiling point 84 °C (183 °F; 357 K)
-57.38·10−6 cm3/mol
1.5287
Viscosity 0.8712 cP at 0.2 °C
0.6432 cP at 22.4 °C
Hazards
Main hazards Toxic
Safety data sheet External MSDS, External MSDS
GHS pictograms GHS02: FlammableGHS07: Harmful
GHS Signal word danger
NFPA 704 (fire diamond)
Flammability code 3: Liquids and solids that can be ignited under almost all ambient temperature conditions. Flash point between 23 and 38 °C (73 and 100 °F). E.g. gasolineHealth code 2: Intense or continued but not chronic exposure could cause temporary incapacitation or possible residual injury. E.g. chloroformReactivity code 0: Normally stable, even under fire exposure conditions, and is not reactive with water. E.g. liquid nitrogenSpecial hazards (white): no codeNFPA 704 four-colored diamond
3
2
0
Flash point −1 °C (30 °F; 272 K)
Related compounds
Related thioethers
 Tetrahydrothiophene
Diethyl sulfide
Related compounds
 Furan
Selenophene
Pyrrole
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
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Infobox references

Thiophene is a heterocyclic compound with the formula C4H4S. Consisting of a planar five-membered ring, it is aromatic as indicated by its extensive substitution reactions. It is a colorless liquid with a benzene-like odor. In most of its reactions, it resembles benzene. Compounds analogous to thiophene include furan (C4H4O), selenophene (C4H4Se) and pyrrole (C4H4NH), which each vary by the heteroatom in the ring.

Isolation and occurrence

Thiophene was discovered by Viktor Meyer in 1882 as a contaminant in benzene.[3] It was observed that isatin (an indole) forms a blue dye if it is mixed with sulfuric acid and crude benzene. The formation of the blue indophenin had long been believed to be a reaction of benzene itself. Viktor Meyer was able to isolate thiophene as the actual substance responsible for this reaction.[4]

Thiophene and especially its derivatives occur in petroleum, sometimes in concentrations up to 1–3%. The thiophenic content of oil and coal is removed via the hydrodesulfurization (HDS) process. In HDS, the liquid or gaseous feed is passed over a form of molybdenum disulfide catalyst under a pressure of H2. Thiophenes undergo hydrogenolysis to form hydrocarbons and hydrogen sulfide. Thus, thiophene itself is converted to butane and H2S. More prevalent and more problematic in petroleum are benzothiophene and dibenzothiophene.

On Mars

Thiophene derivatives have been detected at nanomole levels in 3.5 billions year old Martian soil sediments (Murray Formation, Pahrump Hills) by the rover Curiosity at Gale crater (Mars) between 2012 and 2017.[5] It represents an important milestone for the mission of the Mars Science Laboratory (MSL) in the long and elusive quest of organic matter on the red planet. Heating at high temperature (500° to 820 °C) of lacustrine mudstone samples by the Sample Analysis at Mars (SAM) instrument allowed gas chromatography-mass spectrometry (GC-MS) analyses of the evolved gases and the detection of aromatic and aliphatic molecules including several thiophene compounds.[6] The presence of carbon-sulfur bonds in macromolecules could have contributed to the preservation of organic matter at very long-term. It is estimated that ~ 5 % of organic molecules analysed by the SAM instrument contains organic sulfur. It remains unknown whether the origin and the mode of formation of these molecules is biotic or abiotic,[7] but their discovery put forward the puzzling question of thiophenic compounds as a possible ancient biosignature on Mars. Detailed analyses of carbon isotopes (δ13C) at trace level by a next generation of Martian rovers, such as Rosalind Franklin,[8] will be necessary to determine if such organic molecules are enriched in light carbon (12C) as living micro-organisms usually are on Earth.

Synthesis and production

Reflecting their high stabilities, thiophenes arise from many reactions involving sulfur sources and hydrocarbons, especially unsaturated ones. The first synthesis of thiophene by Meyer, reported the same year that he made his discovery, involves acetylene and elemental sulfur. Thiophenes are classically prepared by the reaction of 1,4-diketones, diesters, or dicarboxylates with sulfidizing reagents such as P4S10 such as in the Paal-Knorr thiophene synthesis. Specialized thiophenes can be synthesized similarly using Lawesson's reagent as the sulfidizing agent, or via the Gewald reaction, which involves the condensation of two esters in the presence of elemental sulfur. Another method is the Volhard–Erdmann cyclization.

Thiophene is produced on a modest scale of around 2,000 metric tons per year worldwide. Production involves the vapor phase reaction of a sulfur source, typically carbon disulfide, and a C-4 source, typically butanol. These reagents are contacted with an oxide catalyst at 500–550 °C.[9]

Properties and structure

At room temperature, thiophene is a colorless liquid with a mildly pleasant odor reminiscent of benzene,[citation needed] with which thiophene shares some similarities. The high reactivity of thiophene toward sulfonation is the basis for the separation of thiophene from benzene, which are difficult to separate by distillation due to their similar boiling points (4 °C difference at ambient pressure). Like benzene, thiophene forms an azeotrope with ethanol.

The molecule is flat; the bond angle at the sulfur is around 93°, the C–C–S angle is around 109°, and the other two carbons have a bond angle around 114°.[10] The C–C bonds to the carbons adjacent to the sulfur are about 1.34 Å, the C–S bond length is around 1.70 Å, and the other C–C bond is about 1.41 Å.[10]

Reactivity

Thiophene is considered to be aromatic, although theoretical calculations suggest that the degree of aromaticity is less than that of benzene. The "electron pairs" on sulfur are significantly delocalized in the pi electron system. As a consequence of its aromaticity, thiophene does not exhibit the properties seen for conventional sulfides. For example, the sulfur atom resists alkylation and oxidation.

Oxidation

Oxidation can occur both at sulfur, giving a thiophene S-oxide, as well as at the 2,3-double bond, giving the thiophene 2,3-epoxide, followed by subsequent NIH shift rearrangement.[11] Oxidation of thiophene by trifluoroperacetic acid also demonstrates both reaction pathways. The major pathway forms the S-oxide as an intermediate, which undergoes subsequent Diels-Alder-type dimerisation and further oxidation, forming a mixture of sulfoxide and sulfone products with a combined yield of 83% (based on NMR evidence):[12][13]

Oxidation of thiophene with trifluoroperacetic acid.png

In the minor reaction pathway, a Prilezhaev epoxidation[14] results in the formation of thiophene-2,3-epoxide that rapidly rearranges to the isomer thiophene-2-one.[12] Trapping experiments[15] demonstrate that this pathway is not a side reaction from the S-oxide intermediate, while isotopic labeling with deuterium confirm that a 1,2-hydride shift occurs and thus that a cationic intermediate is involved.[12] If the reaction mixture is not anhydrous, this minor reaction pathway is suppressed as water acts as a competing base.[12]

Oxidation of thiophenes may be relevant to the metabolic activation of various thiophene-containing drugs, such as tienilic acid and the investigational anticancer drug OSI-930.[16][17][18][19]

Alkylation

Although the sulfur atom is relatively unreactive, the flanking carbon centers, the 2- and 5-positions, are highly susceptible to attack by electrophiles. Halogens give initially 2-halo derivatives followed by 2,5-dihalothiophenes; perhalogenation is easily accomplished to give C4X4S (X = Cl, Br, I).[20] Thiophene brominates 107 times faster than does benzene. Acetylation occurs readily to give 2-acetylthiophene, precursor to thiophene-2-carboxylic acid and thiophene-2-acetic acid.[9]

Chloromethylation and chloroethylation occur readily at the 2,5-positions. Reduction of the chloromethyl product gives 2-methylthiophene. Hydrolysis followed by dehydration of the chloroethyl species gives 2-vinylthiophene.[21][22]

Desulfurization by Raney nickel

Desulfurization of thiophene with Raney nickel affords butane. When coupled with the easy 2,5-difunctionalization of thiophene, desulfurization provides a route to 1,4-disubstituted butanes.

Desulfurization & reduction thiophene derivatives by raney nickel.svg

Polymerization

The polymer formed by linking thiophene through its 2,5 positions is called polythiophene. Polymerization is conducted by oxidation using electrochemical methods (electropolymerization) or electron-transfer reagents. An idealized equation is shown:

n C4H4S → (C4H2S)n + 2n H+ + 2n e−

Polythiophene itself has poor processing properties and so is little studied. More useful are polymers derived from thiophenes substituted at the 3- and 3- and 4- positions, such as EDOT (ethylenedioxythiophene). Polythiophenes become electrically conductive upon partial oxidation, i.e. they obtain some of the characteristics typically observed in metals.[23]

Coordination chemistry

Thiophene exhibits little sulfide-like character, but it does serve as a pi-ligand forming piano stool complexes such as Cr(η5-C4H4S)(CO)3.[24]

Thiophene derivatives

Thienyl

Upon deprotonation, thiophene converts to the thienyl group, C4H3S−. Although the anion per se does not exist, the organolithium derivatives do. Thus reaction of thiophene with butyl lithium gives 2-lithiothiophene, also called 2-thienyllithium. This reagent reacts with electrophiles to give thienyl derivatives, such as the thiol.[25] Oxidation of thienyllithium gives 2,2'-dithienyl, (C4H3S)2. Thienyl lithium is employed in the preparation of higher order mixed cuprates.[26] Coupling of thienyl anion equivalents gives dithienyl, an analogue of biphenyl.

Ring-fused thiophenes

Fusion of thiophene with a benzene ring gives benzothiophene. Fusion with two benzene rings gives either dibenzothiophene (DBT) or naphthothiophene. Fusion of a pair of thiophene rings gives isomers of thienothiophene.

Uses

Thiophenes are important heterocyclic compounds that are widely used as building blocks in many agrochemicals and pharmaceuticals.[9] The benzene ring of a biologically active compound may often be replaced by a thiophene without loss of activity.[27] This is seen in examples such as the NSAID lornoxicam, the thiophene analog of piroxicam, and sufentanil, the thiophene analog of fentanyl.

References

  1. ↑ International Union of Pure and Applied Chemistry (2014). Nomenclature of Organic Chemistry: IUPAC Recommendations and Preferred Names 2013. The Royal Society of Chemistry. pp. 141. doi:10.1039/9781849733069. ISBN 978-0-85404-182-4. 
  2. ↑ GHS: GESTIS 010090
  3. ↑ Meyer, Viktor (1883). "Ueber den Begleiter des Benzols im Steinkohlenteer". Berichte der Deutschen Chemischen Gesellschaft 16: 1465–1478. doi:10.1002/cber.188301601324. https://zenodo.org/record/1425291/files/article.pdf. 
  4. ↑ Ward C., Sumpter (1944). "The Chemistry of Isatin". Chemical Reviews 34 (3): 393–434. doi:10.1021/cr60109a003. 
  5. ↑ Voosen, Paul (2018). "NASA rover hits organic pay dirt on Mars". Science. doi:10.1126/science.aau3992. ISSN 0036-8075. 
  6. ↑ Eigenbrode, Jennifer L.; Summons, Roger E.; Steele, Andrew; Freissinet, Caroline; Millan, Maëva; Navarro-González, Rafael; Sutter, Brad; McAdam, Amy C. et al. (2018). "Organic matter preserved in 3-billion-year-old mudstones at Gale crater, Mars". Science 360 (6393): 1096–1101. doi:10.1126/science.aas9185. ISSN 0036-8075. PMID 29880683. Bibcode: 2018Sci...360.1096E. https://authors.library.caltech.edu/86910/2/aas9185-Eigenbrode-SM.pdf. 
  7. ↑ Heinz, Jacob; Schulze-Makuch, Dirk (2020). "Thiophenes on Mars: Biotic or Abiotic Origin?". Astrobiology 20 (4): 552–561. doi:10.1089/ast.2019.2139. PMID 32091933. Bibcode: 2020AsBio..20..552H. 
  8. ↑ "The Curiosity rover found organic molecules on Mars. This is why they're exciting". 6 March 2020. https://edition.cnn.com/2020/03/06/world/curiosity-rover-organic-molecules-thiophenes-scn/index.html. 
  9. ↑ 9.0 9.1 9.2 Swanston, Jonathan (2006). "Thiophene". Ullmann's Encyclopedia of Industrial Chemistry. Weinheim: Wiley-VCH. doi:10.1002/14356007.a26_793.pub2. ISBN 3527306730. .
  10. ↑ 10.0 10.1 Cambridge Structural Database
  11. ↑ Treiber, A., Dansette, P. M., Amri, H. E., Girault, J.-P., Ginderow, D., Mornon, J.-P., Mansuy, D.; Dansette; El Amri; Girault; Ginderow; Mornon; Mansuy (1997). "Chemical and Biological Oxidation of Thiophene: Preparation and Complete Characterization of Thiophene S-Oxide Dimers and Evidence for Thiophene S-Oxide as an Intermediate in Thiophene Metabolism in Vivo and in Vitro". J. Am. Chem. Soc. 119 (7): 1565–1571. doi:10.1021/ja962466g. 
  12. ↑ 12.0 12.1 12.2 12.3 Treiber, Alexander (2002). "Mechanism of the Aromatic Hydroxylation of Thiophene by Acid-Catalyzed Peracid Oxidation". J. Org. Chem. 67 (21): 7261–7266. doi:10.1021/jo0202177. PMID 12375952. 
  13. ↑ Caster, Kenneth C.; Rao, A. Somasekar; Mohan, H. Rama; McGrath, Nicholas A.; Brichacek, Matthew (2012). "Encyclopedia of Reagents for Organic Synthesis". e-EROS Encyclopedia of Reagents for Organic Synthesis. doi:10.1002/047084289X.rt254.pub2. ISBN 978-0471936237. 
  14. ↑ Hagen, Timothy J. (2007). "Prilezhaev reaction". in Li, Jie Jack; Corey, E. J.. Name Reactions of Functional Group Transformations. John Wiley & Sons. pp. 274–281. ISBN 9780470176504. https://books.google.com/books?id=WZ0DxnPNAdAC&pg=PA274. 
  15. ↑ Anslyn, Eric V.; Dougherty, Dennis A. (2006). "8.8 Miscellaneous Experiments for Studying Mechanism". Modern Physical Organic Chemistry. University Science Books. pp. 471–482. ISBN 9781891389313. https://books.google.com/books?id=gY-Sxijk_tMC&pg=PA474. 
  16. ↑ Mansuy, D., Valadon, P., Erdelmeier, I., López García, P., Amar, C., Girault, J. P., and Dansette, P. M. (1991). "Thiophene S-oxides as new reactive metabolites: Formation by cytochrome-P450 dependent oxidation and reaction with nucleophiles". J. Am. Chem. Soc. 113 (20): 7825–7826. doi:10.1021/ja00020a089. 
  17. ↑ Rademacher P. M., Woods C. M., Huang Q., Szklarz G. D., Nelson S. D.; Woods; Huang; Szklarz; Nelson (2012). "Differential Oxidation of Two Thiophene-Containing Regioisomers to Reactive Metabolites by Cytochrome P450 2C9". Chem. Res. Toxicol. 25 (4): 895–903. doi:10.1021/tx200519d. PMID 22329513. 
  18. ↑ Mansuy D., Dansette P. M.; Dansette (2011). "Sulfenic acids as reactive intermediates in xenobiotic metabolism". Archives of Biochemistry and Biophysics 507 (1): 174–185. doi:10.1016/j.abb.2010.09.015. PMID 20869346. https://zenodo.org/record/898058. 
  19. ↑ Dansette, PM, Rosi, J, Debernardi, J, Bertho G, Mansuy D; Rosi; Debernardi; Bertho; Mansuy (2012). "Metabolic Activation of Prasugrel: Nature of the Two Competitive Pathways Resulting in the Opening of Its Thiophene Ring". Chem. Res. Toxicol. 25 (5): 1058–1065. doi:10.1021/tx3000279. PMID 22482514. 
  20. ↑ Henry Y. Lew and C. R. Noller (1963). "2-Iodolthiophene". Organic Syntheses. http://www.orgsyn.org/demo.aspx?prep=CV4P0545. ; Collective Volume, 4, pp. 545 
  21. ↑ W. S. Emerson and T. M. Patrick Jr. (1963). "2-Vinylthiophene". Organic Syntheses. http://www.orgsyn.org/demo.aspx?prep=CV4P0980. ; Collective Volume, 4, pp. 980 
  22. ↑ K. B. Wiberg and H. F. McShane (1955). "2-Chloromethylthiophene". Organic Syntheses. http://www.orgsyn.org/demo.aspx?prep=CV3P0197. ; Collective Volume, 3, pp. 1 
  23. ↑ J. Roncali (1992). "Conjugated poly(thiophenes): synthesis, functionalization, and applications". Chem. Rev. 92 (4): 711–738. doi:10.1021/cr00012a009. 
  24. ↑ Rauchfuss, T. B., "The Coordination Chemistry of Thiophenes", Progress in Inorganic Chemistry 1991, volume 39, pp. 259-311. ISBN:978-0-471-54489-0
  25. ↑ E. Jones and I. M. Moodie (1988). "2-Thiophenethiol". Organic Syntheses. http://www.orgsyn.org/demo.aspx?prep=CV6P0979. ; Collective Volume, 6, pp. 979 
  26. ↑ Lipshutz, Bruce H.; Moretti, Robert; Crow, Robert (1990). "Mixed Higher-order Cyanocuprate-induced Epoxide Openings: 1-Benzyloxy-4-penten-2-ol". Org. Synth. 69: 80. doi:10.15227/orgsyn.069.0080. 
  27. ↑ Daniel Lednicer (1999). The Organic Chemistry of Drug Synthesis. 6. New York: Wiley Interscience. pp. 187. ISBN 0-471-24510-0. 

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