Biology:mir-398 microRNA precursor family

mir-398
Identifiers
Symbol	mir-398
Rfam	RF00695
miRBase family	MIPF0000107
Other data
RNA type	microRNA
Domain(s)	Eukaryota;
PDB structures	PDBe

In molecular biology mir-398 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

See also

• MicroRNA

Further reading

• "MicroRNAs as regulators in plant metal toxicity response". Frontiers in Plant Science 3: 105. 2012. doi:10.3389/fpls.2012.00105. PMID 22661980. 
• Wu, Keqiang, ed (2012). "Effects of aluminum oxide nanoparticles on the growth, development, and microRNA expression of tobacco (Nicotiana tabacum)". PLOS ONE 7 (5): e34783. doi:10.1371/journal.pone.0034783. PMID 22606225. Bibcode: 2012PLoSO...734783B. 
• "Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis". Planta 236 (2): 647–57. August 2012. doi:10.1007/s00425-012-1643-9. PMID 22526500. 
• "Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering". The Journal of Biological Chemistry 287 (19): 16007–16. May 2012. doi:10.1074/jbc.M111.337485. PMID 22431732. 
• "Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana". Plant Science 187: 59–68. May 2012. doi:10.1016/j.plantsci.2012.01.014. PMID 22404833. 
• "Functions of microRNAs in plant stress responses". Trends in Plant Science 17 (4): 196–203. April 2012. doi:10.1016/j.tplants.2012.01.010. PMID 22365280. 
• "Identification of miR414 and expression analysis of conserved miRNAs from Stevia rebaudiana". Genomics, Proteomics & Bioinformatics 9 (6): 211–7. December 2011. doi:10.1016/S1672-0229(11)60024-7. PMID 22289477. 
• Pfeffer, Sebastien, ed (2012). "Cloning and characterization of maize miRNAs involved in responses to nitrogen deficiency". PLOS ONE 7 (1): e29669. doi:10.1371/journal.pone.0029669. PMID 22235323. Bibcode: 2012PLoSO...729669Z. 
• "Identification and validation of Asteraceae miRNAs by the expressed sequence tag analysis". Gene 493 (2): 253–9. February 2012. doi:10.1016/j.gene.2011.11.024. PMID 22146318. 
• Moustafa, Ahmed, ed (2011). "Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots". PLOS ONE 6 (11): e28009. doi:10.1371/journal.pone.0028009. PMID 22132192. Bibcode: 2011PLoSO...628009X. 
• "Conservation and diversity of microRNA-associated copper-regulatory networks in Populus trichocarpa". Journal of Integrative Plant Biology 53 (11): 879–91. November 2011. doi:10.1111/j.1744-7909.2011.01080.x. PMID 22013976. 
• "Plants contain two SCO proteins that are differentially involved in cytochrome c oxidase function and copper and redox homeostasis". Journal of Experimental Botany 62 (12): 4281–94. August 2011. doi:10.1093/jxb/err138. PMID 21543521. 
• "MiR398 and plant stress responses". Physiologia Plantarum 143 (1): 1–9. September 2011. doi:10.1111/j.1399-3054.2011.01477.x. PMID 21496029. 
• "miRNA expression patterns of Triticum dicoccoides in response to shock drought stress". Planta 233 (3): 471–84. March 2011. doi:10.1007/s00425-010-1309-4. PMID 21069383. 
• "New insights into miR398 functions in Arabidopsis". Plant Signaling & Behavior 5 (6): 684–6. June 2010. doi:10.4161/psb.5.6.11573. PMID 20400846. 
• "Comparative transcriptome analysis of green/white variegated sectors in Arabidopsis yellow variegated2: responses to oxidative and other stresses in white sectors". Journal of Experimental Botany 61 (9): 2433–45. May 2010. doi:10.1093/jxb/erq075. PMID 20400527. 
• "An Array Platform for Identification of Stress-Responsive MicroRNAs in Plants". Plant Stress Tolerance. Methods in Molecular Biology. 639. 2010. pp. 253–69. doi:10.1007/978-1-60761-702-0_15. ISBN 978-1-60761-701-3. 
• "Transcriptome-wide identification of microRNA targets in rice". The Plant Journal 62 (5): 742–59. June 2010. doi:10.1111/j.1365-313X.2010.04187.x. PMID 20202174. 
• "[The role of miR398 in plant stress responses]". Yi Chuan = Hereditas 32 (2): 129–34. February 2010. doi:10.3724/sp.j.1005.2010.00129. PMID 20176556. 
• "microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis". The Plant Journal 62 (3): 454–62. May 2010. doi:10.1111/j.1365-313X.2010.04162.x. PMID 20128885. https://hal.archives-ouvertes.fr/hal-01203867/file/40292_20120119042025978_1.pdf. 
• "Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis". Nucleic Acids Research 38 (9): 3081–93. May 2010. doi:10.1093/nar/gkp1240. PMID 20110261. 
• "Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum". Physiologia Plantarum 138 (2): 226–37. February 2010. doi:10.1111/j.1399-3054.2009.01320.x. PMID 20015123. 
• "miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula". Planta 231 (3): 705–16. February 2010. doi:10.1007/s00425-009-1078-0. PMID 20012085. 
• "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing". Plant Physiology 151 (4): 2120–32. December 2009. doi:10.1104/pp.109.147280. PMID 19854858. 
• "Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana". Plant Molecular Biology 71 (1–2): 51–9. September 2009. doi:10.1007/s11103-009-9508-8. PMID 19533381. 
• "The role of microRNAs in copper and cadmium homeostasis". Biochemical and Biophysical Research Communications 386 (1): 6–10. August 2009. doi:10.1016/j.bbrc.2009.05.137. PMID 19501049. 
• "Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398". FEBS Letters 583 (6): 1039–44. March 2009. doi:10.1016/j.febslet.2009.02.024. PMID 19236868. 
• "Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis". Planta 229 (4): 1009–14. March 2009. doi:10.1007/s00425-009-0889-3. PMID 19148671. 
• "SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis". The Plant Cell 21 (1): 347–61. January 2009. doi:10.1105/tpc.108.060137. PMID 19122104. 
• "Arabidopsis small RNAs and their targets during cyst nematode parasitism". Molecular Plant-Microbe Interactions 21 (12): 1622–34. December 2008. doi:10.1094/MPMI-21-12-1622. PMID 18986258. 
• "MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis". The Journal of Biological Chemistry 283 (23): 15932–45. June 2008. doi:10.1074/jbc.M801406200. PMID 18408011. 
• "Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases". Plant Molecular Biology 67 (4): 403–17. July 2008. doi:10.1007/s11103-008-9329-1. PMID 18392778. 
• "How do plants respond to copper deficiency?". Plant Signaling & Behavior 3 (4): 231–2. April 2008. doi:10.4161/psb.3.4.5094. PMID 19704637. 
• "Identification and characterization of small RNAs from the phloem of Brassica napus". The Plant Journal 53 (5): 739–49. March 2008. doi:10.1111/j.1365-313X.2007.03368.x. PMID 18005229. http://oa.upm.es/3033/. 
• "Regulation of copper homeostasis by micro-RNA in Arabidopsis". The Journal of Biological Chemistry 282 (22): 16369–78. June 2007. doi:10.1074/jbc.M700138200. PMID 17405879. 
• "Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance". The Plant Cell 18 (8): 2051–65. August 2006. doi:10.1105/tpc.106.041673. PMID 16861386. 

External links

• Page for mir-398 microRNA precursor family at Rfam