Biology:bZIP domain
| bZIP transcription factor | |||||||||
|---|---|---|---|---|---|---|---|---|---|
 CREB (top) is a transcription factor capable of binding DNA via the bZIP domain (bottom) and regulating gene expression. | |||||||||
| Identifiers | |||||||||
| Symbol | bZIP_1 | ||||||||
| Pfam | PF00170 | ||||||||
| InterPro | IPR011616 | ||||||||
| PROSITE | PDOC00036 | ||||||||
| SCOP2 | 1ysa / SCOPe / SUPFAM | ||||||||
| CDD | cd14686 | ||||||||
| Membranome | 235 | ||||||||
| |||||||||
The Basic Leucine Zipper Domain (bZIP domain) is found in many DNA binding eukaryotic proteins. One part of the domain contains a region that mediates sequence specific DNA binding properties and the leucine zipper that is required to hold together (dimerize) two DNA binding regions. The DNA binding region comprises a number of basic amino acids such as arginine and lysine. Proteins containing this domain are transcription factors.[1][2]
bZIP transcription factors
bZIP transcription factors are found in all eukaryotes and form one of the largest families of dimerizing TFs.[3] An evolutionary study from 2008 revealed that 4 bZIP genes were encoded by the genome of the most recent common ancestor of all plants.[4] Interactions between bZIP transcription factors are numerous and complex [5][6][3] and play important roles in cancer development[7] in epithelial tissues, steroid hormone synthesis by cells of endocrine tissues,[8] factors affecting reproductive functions,[9] and several other phenomena that affect human health.
bZIP domain containing proteins
- AP-1 fos/jun heterodimer that forms a transcription factor
- Jun-B transcription factor
- CREB cAMP response element transcription factor
- OPAQUE2 (O2) transcription factor of the 22-kD zein gene that encodes a class of storage proteins in the endosperm of maize (Zea mays) kernels
- NFE2L2 or Nrf2
- Bzip Maf transcription factors
Human proteins containing this domain
ATF1; ATF2; ATF4; ATF5; ATF6; ATF7; BACH1; BACH2; BATF; BATF2; CEBPA; CEBPB; CEBPD; CEBPE; CEBPG; CEBPZ; CREB1; CREB3; CREB3L1; CREB3L2; CREB3L3; CREB3L4; CREB5; CREBL1; CREM; E4BP4; FOSL1; FOSL2; JUN; JUNB; JUND; MAFA; MAFB; MAFF; MAFG; NRL; C-MAF; MAFK; NFE2; NFE2L2; NFE2L3; SNFT; XBP1
References
- ↑ Ellenberger T (1994). "Getting a grip in DNA recognition: structures of the basic region leucine zipper, and the basic region helix-loop-helix DNA-binding domains.". Curr. Opin. Struct. Biol. 4 (1): 12–21. doi:10.1016/S0959-440X(94)90054-X.
- ↑ Hurst HC (1995). "Transcription factors 1: bZIP proteins". Protein Profile 2 (2): 101–68. PMID 7780801.
- ↑ 3.0 3.1 Amoutzias, Grigoris D.; Robertson, David L.; Van de Peer, Yves; Oliver, Stephen G. (2008-05-01). "Choose your partners: dimerization in eukaryotic transcription factors". Trends in Biochemical Sciences 33 (5): 220–229. doi:10.1016/j.tibs.2008.02.002. ISSN 0968-0004. PMID 18406148.
- ↑ Shiu, Shin-Han, ed (2008). "The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes". PLOS ONE 3 (8): e2944. doi:10.1371/journal.pone.0002944. PMID 18698409. Bibcode: 2008PLoSO...3.2944C.
- ↑ Vinson, Charles; Acharya, Asha; Taparowsky, Elizabeth J. (2006-01-01). "Deciphering B-ZIP transcription factor interactions in vitro and in vivo". Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1759 (1–2): 4–12. doi:10.1016/j.bbaexp.2005.12.005. ISSN 0006-3002. PMID 16580748. https://zenodo.org/record/1258776.
- ↑ Newman, John R. S.; Keating, Amy E. (2003-06-27). "Comprehensive identification of human bZIP interactions with coiled-coil arrays". Science 300 (5628): 2097–2101. doi:10.1126/science.1084648. ISSN 1095-9203. PMID 12805554. Bibcode: 2003Sci...300.2097N.
- ↑ "The role of ATF-2 in oncogenesis". BioEssays 30 (4): 314–27. April 2008. doi:10.1002/bies.20734. PMID 18348191.
- ↑ "Regulation of steroidogenesis and the steroidogenic acute regulatory protein by a member of the cAMP response-element binding protein family". Mol. Endocrinol. 16 (1): 184–99. January 2002. doi:10.1210/mend.16.1.0759. PMID 11773448.
- ↑ "Identification of a GABP alpha/beta binding site involved in the induction of oxytocin receptor gene expression in human breast cells, potentiation by c-Fos/c-Jun". Endocrinology 140 (5): 2268–79. May 1999. doi:10.1210/endo.140.5.6710. PMID 10218980.
External links
- bZIP domain entry in the SMART database
- bZIP family at PlantTFDB: Plant Transcription Factor Database
- Plant bZIP transcription factors
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