Biology:IRF4

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Short description: Protein-coding gene in the species Homo sapiens


A representation of the 3D structure of the protein myoglobin showing turquoise α-helices.
Generic protein structure example

Interferon regulatory factor 4 (IRF4) also known as MUM1 is a protein that in humans is encoded by the IRF4 gene.[1][2][3] IRF4 functions as a key regulatory transcription factor in the development of human immune cells.[4][5] The expression of IRF4 is essential for the differentiation of T lymphocytes and B lymphocytes as well as certain myeloid cells.[4] Dysregulation of the IRF4 gene can result in IRF4 functioning either as an oncogene or a tumor-suppressor, depending on the context of the modification.[4]

The MUM1 symbol is also the current HGNC official symbol for melanoma associated antigen (mutated) 1 (HGNC:29641).

Immune cell development

IRF4 is a transcription factor belonging to the Interferon Regulatory Factor (IRF) family of transcription factors.[4][5] In contrast to some other IRF family members, IRF4 expression is not initiated by interferons; rather, IRF4 expression is promoted by a variety of bioactive stimuli, including antigen receptor engagement, lipopolysaccharide (LPS), IL-4, and CD40.[4][5] IRF4 can function either as an activating or an inhibitory transcription factor depending on its transcription cofactors.[4][5] IRF4 frequently cooperates with the cofactors B-cell lymphoma 6 protein (BCL6) and nuclear factor of activated T-cells (NFATs).[4] IRF4 expression is limited to cells of the immune system, in particular T cells, B cells, macrophages and dendritic cells.[4][5]

T cell differentiation

IRF4 plays an important role in the regulation of T cell differentiation. In particular, IRF4 ensures the differentiation of CD4+ T helper cells into distinct subsets.[4] IRF4 is essential for the development of Th2 cells and Th17 cells. IRF4 regulates this differentiation via apoptosis and cytokine production, which can change depending on the stage of T cell development.[5] For example, IRF4 limits production of Th2-associated cytokines in naïve T cells while its upregulates the production of Th2 cytokines in effector and memory T cells.[4] While not essential, IRF4 is also believed to play a role in CD8+ cytotoxic T cell differentiation through its regulation of factors directly involved in this process, including BLIMP-1, BATF, T-bet, and RORγt.[4] IRF4 is necessary for effector function of T regulatory cells due to its role as a regulatory factor for BLIMP-1.[4]  

B cell differentiation

IRF4 is an essential regulatory component at various stages of B cell development. In early B cell development, IRF4 functions alongside IRF8 to induce the expression of the Ikaros and Aiolos transcription factors, which decrease expression of the pre-B-cell-receptor.[5] IRF4 then regulates the secondary rearrangement of κ and λ chains, making IRF4 essential for the continued development of the BCR.[4]

IRF4 also occupies an essential position in the adaptive immune response of mature B cells. When IRF4 is absent, mature B cells fail to form germinal centers (GCs) and proliferate excessively in both the spleen and lymph nodes.[5] IRF4 expression commences GC formation through its upregulation of transcription factors BCL6 and POU2AF1, which promote germinal center formation.[6] IRF4 expression decreases in B cells once the germinal center forms, since IRF4 expression is not necessary for sustained GC function; however, IRF4 expression increases significantly when B cells prepare to leave the germinal center to form plasma cells.[5]

Long-lived plasma cells

Long-lived plasma cells are memory B cells that secrete high-affinity antibodies and help preserve immunological memory to specific antigens.[7] IRF4 plays a significant role at multiple stages of long-lived plasma cell differentiation. The effects of IRF4 expression are heavily dependent on the quantity of IRF4 present.[6] A limited presence of IRF4 activates BCL6, which is essential for the formation of germinal centers, from which plasma cells differentiate.[7] In contrast, elevated expression of IRF4 represses BCL6 expression and upregulates Blimp-1 and Zbtb20 expression.[7] This response, dependent on a high dose of IRF4, helps initiate the differentiation of germinal center B cells into plasma cells.[7]

IRF4 expression is necessary for isotype class switch recombination in germinal center B cells that will become plasma cells. B cells that lack IRF4 fail to undergo immunoglobulin class switching.[5] Without IRF4, B cells fail to upregulate the AID enzyme, a component necessary for inducing mutations in immunoglobulin switch regions of B cell DNA during somatic hypermutation.[5] In the absence of IRF4, B cells will not differentiate into Ig-secreting plasma cells.[5]

IRF4 expression continues to be necessary for long-lived plasma cells once differentiation has occurred. In the absence of IRF4, long-lived plasma cells disappear, suggesting that IRF4 plays a role in regulating molecules essential for the continued survival of these cells.[7]

Myeloid cell differentiation

Among myeloid cells, IRF4 expression has been identified in dendritic cells (DCs) and macrophages.[4][5]

Dendritic cells (DCs)

The transcription factors IRF4 and IRF8 work in concert to achieve DC differentiation.[4][5] IRF4 expression is responsible for inducing development of CD4+ DCs, while IRF8 expression is necessary for the development of CD8+ DCs.[5] Expression of either IRF4 or IRF8 can result in CD4-/CD8- DCs.[5] Differentiation of DC subtypes also depends on IRF4's interaction with the growth factor GM-CSF.[4] IRF4 expression is necessary for ensuring that monocyte-derived dendritic cells (Mo-DCs) can cross-present antigen to CD8+ cells.[4]

Macrophages

IRF4 and IRF8 are also significant transcription factors in the differentiation of common myeloid progenitors (CMPs) into macrophages.[4] IRF4 is expressed at a lower level than IRF8 in these progenitor cells; however, IRF4 expression appears to be particularly important for the development of M2 macrophages.[4] JMJD3, which regulates IRF4, has been identified as an important regulator of M2 macrophage polarization, suggesting that IRF4 may also take part in this regulatory process.[4]

Clinical significance

In melanocytic cells the IRF4 gene may be regulated by MITF.[8] IRF4 is a transcription factor that has been implicated in acute leukemia.[9] This gene is strongly associated with pigmentation: sensitivity of skin to sun exposure, freckles, blue eyes, and brown hair color.[10] A variant has been implicated in greying of hair.[11]

The World Health Organization (2016) provisionally defined large B-cell lymphoma with IRF4 rearrangement as a rare indolent large B-cell lymphoma of children and adolescents. This indolent lymphoma mimics, and must be distinguished from, pediatric-type follicular lymphoma.[12] The hallmark of large B-cell lymphoma with IRF4 rearrangement is the overexpression of the IRF4 gene by the disease's malignant cells. This overexpression is forced by the acquisition in these cells of a translocation of IRF4 from its site on the short (i.e. p) arm of chromosome 6 at position 25.3[13] to a site near the IGH@ immunoglobulin heavy locus on the long (i.e. q) arm of chromosome 14 at position 32.33[14][15]

Interactions

IRF4 has been shown to interact with:

See also

References

  1. ↑ "Cloning of human lymphocyte-specific interferon regulatory factor (hLSIRF/hIRF4) and mapping of the gene to 6p23-p25". Genomics 37 (2): 229–233. October 1996. doi:10.1006/geno.1996.0547. PMID 8921401. 
  2. ↑ "Interferon regulatory factor 4 is involved in Epstein-Barr virus-mediated transformation of human B lymphocytes". Journal of Virology 82 (13): 6251–6258. July 2008. doi:10.1128/JVI.00163-08. PMID 18417578. 
  3. ↑ "Entrez Gene: IRF4 interferon regulatory factor 4". https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=3662. 
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 4.13 4.14 4.15 4.16 4.17 4.18 4.19 4.20 4.21 4.22 4.23 4.24 4.25 4.26 4.27 Nam S, Lim J-S (2016). "Essential role of interferon regulatory factor 4 (IRF4) in immune cell development." Arch. Pharm. Res. 39: 1548–1555. doi:10.1007/s12272-016-0854-1.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 Shaffer AL, Tolga Emre NC, Romesser PB, Staudt LM (2009). "IRF4: Immunity. Malignancy! Therapy?" Clinical Cancer Research. 15 (9): 2954-2961. doi:10.1158/1078-0432.CCR-08-1845
  6. ↑ 6.0 6.1 Laidlaw BJ, Cyster JG (2021). "Transcriptional regulation of memory B cell differentiation." Nat. Rev. Immunol. 21: 209–220. doi:10.1038/s41577-020-00446-2.
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 Khodadadi L, Cheng Q, Radbruch A and Hiepe F (2019). "The Maintenance of Memory Plasma Cells." Front. Immunol. 10: 721. doi:10.3389/fimmu.2019.00721.
  8. ↑ "Novel MITF targets identified using a two-step DNA microarray strategy". Pigment Cell & Melanoma Research 21 (6): 665–676. December 2008. doi:10.1111/j.1755-148X.2008.00505.x. PMID 19067971. 
  9. ↑ "Implication of IRF4 aberrant gene expression in the acute leukemias of childhood". PLOS ONE 8 (8): e72326. 2013. doi:10.1371/journal.pone.0072326. PMID 23977280. Bibcode: 2013PLoSO...872326A. 
  10. ↑ "A polymorphism in IRF4 affects human pigmentation through a tyrosinase-dependent MITF/TFAP2A pathway". Cell 155 (5): 1022–1033. November 2013. doi:10.1016/j.cell.2013.10.022. PMID 24267888. 
  11. ↑ "A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features". Nature Communications 7: 10815. March 2016. doi:10.1038/ncomms10815. PMID 26926045. Bibcode: 2016NatCo...710815A. 
  12. ↑ "Clinical Impact of the 2016 Update to the WHO Lymphoma Classification". Current Treatment Options in Oncology 18 (7): 45. July 2017. doi:10.1007/s11864-017-0483-z. PMID 28670664. 
  13. ↑ "IRF4 interferon regulatory factor 4 [Homo sapiens (Human)] - Gene - NCBI". https://www.ncbi.nlm.nih.gov/gene/3662. 
  14. ↑ "IGH immunoglobulin heavy locus [Homo sapiens (Human)] - Gene - NCBI". https://www.ncbi.nlm.nih.gov/gene/3492. 
  15. ↑ "Rare mature B-cell lymphomas in children and adolescents". Hematological Oncology 37 (Suppl 1): 53–61. June 2019. doi:10.1002/hon.2585. PMID 31187530. 
  16. ↑ 16.0 16.1 "Lineage-specific modulation of interleukin 4 signaling by interferon regulatory factor 4". The Journal of Experimental Medicine 190 (12): 1837–1848. December 1999. doi:10.1084/jem.190.12.1837. PMID 10601358. 
  17. ↑ "Interferon regulatory factor 4 (IRF4) interacts with NFATc2 to modulate interleukin 4 gene expression". The Journal of Experimental Medicine 195 (8): 1003–1012. April 2002. doi:10.1084/jem.20011128. PMID 11956291. 
  18. ↑ "Assembly requirements of PU.1-Pip (IRF-4) activator complexes: inhibiting function in vivo using fused dimers". The EMBO Journal 18 (4): 977–991. February 1999. doi:10.1093/emboj/18.4.977. PMID 10022840. 
  19. ↑ "Crystallization and characterization of PU.1/IRF-4/DNA ternary complex". Journal of Structural Biology 139 (1): 55–59. July 2002. doi:10.1016/S1047-8477(02)00514-2. PMID 12372320. 

Further reading

External links

This article incorporates text from the United States National Library of Medicine, which is in the public domain.




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